HealthTrackRx PCR Testing
HealthTrackRx is the nation’s premier infectious disease laboratory, specializing in RT-PCR (Real-Time Reverse Transcription Polymerase Chain Reaction), (which is) one of the foremost methods of detecting bacteria or viruses on the molecular level. RT-PCR delivers higher degrees of accuracy and considerably faster results than culture, which can take 3-14 days or longer for results. This greatly delays the time necessary for an accurate diagnosis and in many cases, result delays can mean the difference between life and death.
Our PCR Assay
HealthTrackRx’s pathogen assay incorporates the latest in RT-PCR technology to analyze your patient’s sample rapidly and reliably. We utilize both Thermo Fisher and Hamilton technology, providing results with the highest specificity and sensitivity in the market. Our assay accurately detects and differentiates ~99% 1 of the most relevant viral, bacterial, and fungal pathogens.
Learn more about how and when to use each test, and the pathogens our tests cover.
Our Menus
Respiratory InfectionsRespiratory InfectionsSPECIMEN TYPES: Nasopharyngeal/Nares, Oropharynx/Throat/Oral, Cough Sputum
COMMON SIGNS & SYMPTOMS: Consider if patient presents with symptoms of an upper respiratory tract infection, including cough, moderate temperature elevation, and mucopurulent sputum.
Bacterial
Haemophilus influenzae
Moraxella catarrhalis
Streptococcus pneumoniae
Haemophilus influenzae
Moraxella catarrhalis
Streptococcus pneumoniae
Atypical Bacteria
Bordetella pertussis, parapertussis, bronchiseptica
Chlamydia pneumoniae
Mycoplasma pneumoniae
Bordetella pertussis, parapertussis, bronchiseptica
Chlamydia pneumoniae
Mycoplasma pneumoniae
Viral
Adenovirus
Coronaviruses (229E, HKU1, NL63, & OC43)
COVID-19 Coronavirus (SARS-CoV-2)
Enterovirus D68
Human metapneumovirus
Influenza virus A, B
Parainfluenza virus (types 1, 2, 3, 4)
Respiratory syncytial virus
Rhinovirus/Enterovirus
Adenovirus
Coronaviruses (229E, HKU1, NL63, & OC43)
COVID-19 Coronavirus (SARS-CoV-2)
Enterovirus D68
Human metapneumovirus
Influenza virus A, B
Parainfluenza virus (types 1, 2, 3, 4)
Respiratory syncytial virus
Rhinovirus/Enterovirus
Resistance
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
ADD-ON: Epstein-Barr Virus (Human Herpesvirus 4, EBV)
SPECIMEN TYPES: Oropharynx/Throat/Oral
COMMON SIGNS & SYMPTOMS: Consider if patient presents with pain in throat, fever, pharyngeal edema, patchy tonsillar exudates, or tender/swollen anterior cervical lymph nodes.
Bacterial
Chlamydia pneumoniae
Fusobacterium nucleatum, necrophorum
Mycoplasma pneumoniae
Streptococcus dysgalactiae (Group C & G Strep)
Streptococcus pyogenes (Group A Strep)
Chlamydia pneumoniae
Fusobacterium nucleatum, necrophorum
Mycoplasma pneumoniae
Streptococcus dysgalactiae (Group C & G Strep)
Streptococcus pyogenes (Group A Strep)
Viral
Adenovirus
Coronaviruses (229E, HKU1, NL63, & OC43)
COVID-19 Coronavirus (SARS-CoV-2)
Enterovirus D68
Human metapneumovirus
Influenza virus A, B
Parainfluenza virus (types 1, 2, 3, 4)
Respiratory syncytial virus
Rhinovirus/Enterovirus
Adenovirus
Coronaviruses (229E, HKU1, NL63, & OC43)
COVID-19 Coronavirus (SARS-CoV-2)
Enterovirus D68
Human metapneumovirus
Influenza virus A, B
Parainfluenza virus (types 1, 2, 3, 4)
Respiratory syncytial virus
Rhinovirus/Enterovirus
Resistance
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
ADD-ON: Chlamydia trachomatis, Epstein-Barr Virus (Human Herpesvirus 4, EBV), Herpes simplex virus 1, Herpes simplex virus 2, Neisseria gonorrhoeae, Treponema pallidum (Syphilis)
SPECIMEN TYPES: Nasopharyngeal/Nares, Oropharynx/Throat/Oral, Cough Sputum
COMMON SIGNS & SYMPTOMS: Consider if patient presents with an acute upper respiratory tract infection, high-grade fever, acute cough, runny nose, pain in throat, wheezing, nasal congestion, shortness of breath, or malaise.
Viral
COVID-19 Coronavirus (SARS-CoV-2)
COVID-19 Coronavirus (SARS-CoV-2)
Influenza virus A, B
Respiratory syncytial virus
Respiratory syncytial virus
Viral
COVID-19 Coronavirus (SARS-CoV-2)
Influenza virus A, B
Respiratory syncytial virus
COVID-19 Coronavirus (SARS-CoV-2)
Influenza virus A, B
Respiratory syncytial virus
SPECIMEN TYPES: Nasopharyngeal/Nares, Oropharynx/Throat/Oral, Cough Sputum
COMMON SIGNS & SYMPTOMS: Consider for pediatric or complex immunocompromised patient with concern of communicable virus or meningitis, or presenting with an acute upper respiratory tract infection.
Viral
Adenovirus
Coronaviruses (229E, HKU1, NL63, & OC43)
COVID-19 Coronavirus (SARS-CoV-2)
Adenovirus
Coronaviruses (229E, HKU1, NL63, & OC43)
COVID-19 Coronavirus (SARS-CoV-2)
Enterovirus D68
Human metapneumovirus
Influenza virus A, B
Parainfluenza virus (types 1, 2, 3, 4)
Human metapneumovirus
Influenza virus A, B
Parainfluenza virus (types 1, 2, 3, 4)
Respiratory syncytial virus
Rhinovirus/Enterovirus
Rhinovirus/Enterovirus
Viral
Adenovirus
Coronaviruses (229E, HKU1, NL63, & OC43)
COVID-19 Coronavirus (SARS-CoV-2)
Enterovirus D68
Human metapneumovirus
Influenza virus A, B
Parainfluenza virus (types 1, 2, 3, 4)
Respiratory syncytial virus
Rhinovirus/Enterovirus
Adenovirus
Coronaviruses (229E, HKU1, NL63, & OC43)
COVID-19 Coronavirus (SARS-CoV-2)
Enterovirus D68
Human metapneumovirus
Influenza virus A, B
Parainfluenza virus (types 1, 2, 3, 4)
Respiratory syncytial virus
Rhinovirus/Enterovirus
SPECIMEN TYPES: Nasopharyngeal/Nares, Oropharynx/Throat/Oral, Cough Sputum
COMMON SIGNS & SYMPTOMS: Consider if patient presents with upper respiratory tract infection, high-grade fever, dyspnea, cough, sputum production, or hypoxia & chest x-ray opacity.
Bacterial
Acinetobacter baumannii
Enterobacter cloacae complex, Klebsiella
(Enterobacter) aerogenes
Escherichia coli
Haemophilus influenzae
Klebsiella pneumoniae, oxytoca
Moraxella catarrhalis
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Serratia marcescens
Staphylococcus aureus
Streptococcus agalactiae (Group B Strep)
Streptococcus pneumoniae
Streptococcus pyogenes (Group A Strep)
Acinetobacter baumannii
Enterobacter cloacae complex, Klebsiella
(Enterobacter) aerogenes
Escherichia coli
Haemophilus influenzae
Klebsiella pneumoniae, oxytoca
Moraxella catarrhalis
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Serratia marcescens
Staphylococcus aureus
Streptococcus agalactiae (Group B Strep)
Streptococcus pneumoniae
Streptococcus pyogenes (Group A Strep)
Atypical Bacteria
Bordetella pertussis, parapertussis, bronchiseptica
Chlamydia pneumoniae
Legionella pneumophila
Mycoplasma pneumoniae
Bordetella pertussis, parapertussis, bronchiseptica
Chlamydia pneumoniae
Legionella pneumophila
Mycoplasma pneumoniae
Viral
Adenovirus
Coronaviruses (229E, HKU1, NL63, & OC43)
COVID-19 Coronavirus (SARS-CoV-2)
Enterovirus D68
Human metapneumovirus
Influenza virus A, B
Parainfluenza virus (types 1, 2, 3, 4)
Respiratory syncytial virus
Rhinovirus/Enterovirus
Adenovirus
Coronaviruses (229E, HKU1, NL63, & OC43)
COVID-19 Coronavirus (SARS-CoV-2)
Enterovirus D68
Human metapneumovirus
Influenza virus A, B
Parainfluenza virus (types 1, 2, 3, 4)
Respiratory syncytial virus
Rhinovirus/Enterovirus
Resistance
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
ADD-ON: Chlamydia trachomatis, Neisseria gonorrhoeae
SPECIMEN TYPES: Ear, Nasopharyngeal/Nares
COMMON SIGNS & SYMPTOMS: Consider if patient presents with acute otitis media ear pain, decreased or muffled hearing & bulging ear drum, drainage from ear, mastoiditis, redness or swelling behind ear lobe, fever, ear pain, headache, or hearing loss.
Bacterial
Enterobacter cloacae complex, Klebsiella
(Enterobacter) aerogenes
Fusobacterium nucleatum, necrophorum
Haemophilus influenzae
Klebsiella pneumoniae, oxytoca
Moraxella catarrhalis
Mycoplasma pneumoniae
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Staphylococcus aureus
Streptococcus pneumoniae
Streptococcus pyogenes (Group A Strep)
Enterobacter cloacae complex, Klebsiella
(Enterobacter) aerogenes
Fusobacterium nucleatum, necrophorum
Haemophilus influenzae
Klebsiella pneumoniae, oxytoca
Moraxella catarrhalis
Mycoplasma pneumoniae
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Staphylococcus aureus
Streptococcus pneumoniae
Streptococcus pyogenes (Group A Strep)
Viral
Adenovirus
Coronaviruses (229E, HKU1, NL63, & OC43)
COVID-19 Coronavirus (SARS-CoV-2)
Enterovirus D68
Human metapneumovirus
Influenza virus A, B
Parainfluenza virus (types 1, 2, 3, 4)
Respiratory syncytial virus
Rhinovirus/Enterovirus
Adenovirus
Coronaviruses (229E, HKU1, NL63, & OC43)
COVID-19 Coronavirus (SARS-CoV-2)
Enterovirus D68
Human metapneumovirus
Influenza virus A, B
Parainfluenza virus (types 1, 2, 3, 4)
Respiratory syncytial virus
Rhinovirus/Enterovirus
Resistance
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
Urinary Tract InfectionsUrinary Tract InfectionsSPECIMEN TYPES: Urine (voided), Urine (catheter), Urethral Swab
COMMON SIGNS & SYMPTOMS: Consider if patient presents with dysuria, hematuria, urgency of urination, frequency of micturition, or pain of micturition.
Bacterial
Acinetobacter baumannii
Citrobacter freundii
Enterobacter cloacae complex, Klebsiella
(Enterobacter) aerogenes
Enterococcus faecalis, faecium
Escherichia coli
Klebsiella pneumoniae, oxytoca
Morganella morganii
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Serratia marcescens
Staphylococcus aureus
Staphylococcus epidermidis,
haemolyticus, lugdunensis
Staphylococcus saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pyogenes (Group A Strep)
Acinetobacter baumannii
Citrobacter freundii
Enterobacter cloacae complex, Klebsiella
(Enterobacter) aerogenes
Enterococcus faecalis, faecium
Escherichia coli
Klebsiella pneumoniae, oxytoca
Morganella morganii
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Serratia marcescens
Staphylococcus aureus
Staphylococcus epidermidis,
haemolyticus, lugdunensis
Staphylococcus saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pyogenes (Group A Strep)
Fungal
Candida albicans, parapsilosis, tropicalis
Candida glabrata
Candida krusei
Candida albicans, parapsilosis, tropicalis
Candida glabrata
Candida krusei
Resistance
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
SPECIMEN TYPES: Urine (voided), Urine (catheter), Urethral Swab
COMMON SIGNS & SYMPTOMS: Consider if patient presents with dysuria, hematuria, urgency of urination, frequency of micturition, pain of micturition, and high risk sexual behavior.
Bacterial
Acinetobacter baumannii
Chlamydia trachomatis
Citrobacter freundii
Enterobacter cloacae complex, Klebsiella
(Enterobacter) aerogenes
Enterococcus faecalis, faecium
Escherichia coli
Klebsiella pneumoniae, oxytoca
Morganella morganii
Mycoplasma genitalium
Mycoplasma hominis
Neisseria gonorrhoeae
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Acinetobacter baumannii
Chlamydia trachomatis
Citrobacter freundii
Enterobacter cloacae complex, Klebsiella
(Enterobacter) aerogenes
Enterococcus faecalis, faecium
Escherichia coli
Klebsiella pneumoniae, oxytoca
Morganella morganii
Mycoplasma genitalium
Mycoplasma hominis
Neisseria gonorrhoeae
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Serratia marcescens
Staphylococcus aureus
Staphylococcus epidermidis,
haemolyticus, lugdunensis
Staphylococcus saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pyogenes (Group A Strep)
Ureaplasma urealyticum
Ureaplasma parvum
Staphylococcus aureus
Staphylococcus epidermidis,
haemolyticus, lugdunensis
Staphylococcus saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pyogenes (Group A Strep)
Ureaplasma urealyticum
Ureaplasma parvum
Protozoal
Trichomonas vaginalis
Trichomonas vaginalis
Fungal
Candida albicans, parapsilosis, tropicalis
Candida glabrata
Candida krusei
Candida albicans, parapsilosis, tropicalis
Candida glabrata
Candida krusei
Resistance
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
Genitourinary InfectionsGenitourinary InfectionsSPECIMEN TYPES: Urine (voided), Urine (catheter), Urethral Swab, Cervical/Vaginal/Cervicovaginal/Endometrial, Vulva/Labia/Vestibule/Perineal, Rectal/Anal, Oropharynx/Throat/Oral, Penile, Genital Skin
COMMON SIGNS & SYMPTOMS: Consider if patient presents with dysuria, hematuria, urgency of urination, frequency of micturition, fever, or abdominal pain.
Bacterial
Acinetobacter baumannii
Atopobium vaginae
BVAB2, 3 (Bacterial vaginosis-associated
bacteria 2, 3); Mobiluncus spp.
Chlamydia trachomatis
Citrobacter freundii
Enterobacter cloacae complex, Klebsiella
(Enterobacter) aerogenes
Enterococcus faecalis, faecium
Escherichia coli
Gardnerella vaginalis
Klebsiella pneumoniae, oxytoca
Megasphaera (types 1, 2)
Mycoplasma genitalium
Mycoplasma hominis
Acinetobacter baumannii
Atopobium vaginae
BVAB2, 3 (Bacterial vaginosis-associated
bacteria 2, 3); Mobiluncus spp.
Chlamydia trachomatis
Citrobacter freundii
Enterobacter cloacae complex, Klebsiella
(Enterobacter) aerogenes
Enterococcus faecalis, faecium
Escherichia coli
Gardnerella vaginalis
Klebsiella pneumoniae, oxytoca
Megasphaera (types 1, 2)
Mycoplasma genitalium
Mycoplasma hominis
Morganella morganii
Neisseria gonorrhoeae
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Serratia marcescens
Staphylococcus aureus
Staphylococcus epidermidis,
haemolyticus, lugdunensis
Staphylococcus saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pyogenes (Group A Strep)
Ureaplasma parvum
Ureaplasma urealyticum
Neisseria gonorrhoeae
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Serratia marcescens
Staphylococcus aureus
Staphylococcus epidermidis,
haemolyticus, lugdunensis
Staphylococcus saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pyogenes (Group A Strep)
Ureaplasma parvum
Ureaplasma urealyticum
Protozoal
Trichomonas vaginalis
Trichomonas vaginalis
Fungal
Candida albicans, parapsilosis, tropicalis
Candida glabrata
Candida krusei
Candida albicans, parapsilosis, tropicalis
Candida glabrata
Candida krusei
Resistance
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
ADD-ON: High Risk HPV types 16, 18, 45
SPECIMEN TYPES: Cervical/Vaginal/Cervicovaginal/Endometrial, Genital Ulcer/Lesion, Rectal/Anal, Oropharynx/Throat/Oral
COMMON SIGNS & SYMPTOMS: Consider if patient presents with dysuria, hematuria, urgency of urination, frequency of micturition, fever, or abdominal pain.
Bacterial
Acinetobacter baumannii
Atopobium vaginae
BVAB2, 3 (Bacterial vaginosis-associated
bacteria 2, 3); Mobiluncus spp.
Chlamydia trachomatis
Citrobacter freundii
Enterobacter cloacae complex, Klebsiella
(Enterobacter) aerogenes
Enterococcus faecalis, faecium
Escherichia coli
Gardnerella vaginalis
Haemophilus ducreyi
Klebsiella pneumoniae, oxytoca
Megasphaera (types 1, 2)
Morganella morganii
Mycoplasma genitalium
Mycoplasma hominis
Acinetobacter baumannii
Atopobium vaginae
BVAB2, 3 (Bacterial vaginosis-associated
bacteria 2, 3); Mobiluncus spp.
Chlamydia trachomatis
Citrobacter freundii
Enterobacter cloacae complex, Klebsiella
(Enterobacter) aerogenes
Enterococcus faecalis, faecium
Escherichia coli
Gardnerella vaginalis
Haemophilus ducreyi
Klebsiella pneumoniae, oxytoca
Megasphaera (types 1, 2)
Morganella morganii
Mycoplasma genitalium
Mycoplasma hominis
Neisseria gonorrhoeae
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Serratia marcescens
Staphylococcus aureus
Staphylococcus epidermidis,
haemolyticus, lugdunensis
Staphylococcus saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pyogenes (Group A Strep)
Treponema pallidum (Syphilis)
Ureaplasma parvum
Ureaplasma urealyticum
Viral
Herpes simplex virus 1
Herpes simplex virus 2
Mpox (Monkeypox)
Varicella zoster virus
(Human Herpesvirus 3, VZV)
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Serratia marcescens
Staphylococcus aureus
Staphylococcus epidermidis,
haemolyticus, lugdunensis
Staphylococcus saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pyogenes (Group A Strep)
Treponema pallidum (Syphilis)
Ureaplasma parvum
Ureaplasma urealyticum
Viral
Herpes simplex virus 1
Herpes simplex virus 2
Mpox (Monkeypox)
Varicella zoster virus
(Human Herpesvirus 3, VZV)
Protozoal
Trichomonas vaginalis
Trichomonas vaginalis
Fungal
Candida albicans, parapsilosis, tropicalis
Candida glabrata
Candida krusei
Candida albicans, parapsilosis, tropicalis
Candida glabrata
Candida krusei
Resistance
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
ADD-ON: High Risk HPV types 16, 18, 45
SPECIMEN TYPES: Urine (voided), Urethral Swab
COMMON SIGNS & SYMPTOMS: Consider if patient has pain with urination, pruritus, burning, and discharge.
Bacterial
Chlamydia trachomatis
Mycoplasma genitalium
Mycoplasma hominis
Neisseria gonorrhoeae
Ureaplasma urealyticum
Ureaplasma parvum
Chlamydia trachomatis
Mycoplasma genitalium
Mycoplasma hominis
Neisseria gonorrhoeae
Ureaplasma urealyticum
Ureaplasma parvum
Viral
Herpes simplex virus 1
Herpes simplex virus 2
Protozoal
Trichomonas vaginalis
Herpes simplex virus 1
Herpes simplex virus 2
Protozoal
Trichomonas vaginalis
Resistance
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
SPECIMEN TYPES: Cervical/Vaginal/Cervicovaginal/Endometrial, Vulva/Labia/Vestibule/Perineal, Urine (voided)
COMMON SIGNS & SYMPTOMS: Consider if patient presents with vaginal discharge, odor, itching, and/or discomfort, bacterial vaginosis, or vulvovaginal candidiasis.
Bacterial
Atopobium vaginae
BVAB2, 3 (Bacterial vaginosis-associated
bacteria 2, 3); Mobiluncus spp.
Chlamydia trachomatis
Gardnerella vaginalis
Megasphaera (types 1, 2)
Neisseria gonorrhoeae
Atopobium vaginae
BVAB2, 3 (Bacterial vaginosis-associated
bacteria 2, 3); Mobiluncus spp.
Chlamydia trachomatis
Gardnerella vaginalis
Megasphaera (types 1, 2)
Neisseria gonorrhoeae
Viral
Herpes simplex virus 1
Herpes simplex virus 2
Protozoal
Trichomonas vaginalis
Fungal
Candida albicans, parapsilosis, tropicalis
Candida glabrata
Candida krusei
Herpes simplex virus 1
Herpes simplex virus 2
Protozoal
Trichomonas vaginalis
Fungal
Candida albicans, parapsilosis, tropicalis
Candida glabrata
Candida krusei
Resistance
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
ADD-ON: High Risk HPV types 16, 18, 45
SPECIMEN TYPES: Cervical/Vaginal/Cervicovaginal/Endometrial, Vulva/Labia/Vestibule/Perineal, Urine (voided)
COMMON SIGNS & SYMPTOMS: Consider if patient has pain with urination, pruritus, burning, urethral discharge, vaginal discharge, odor, itching and/or discomfort, or recurrent vaginitis.
Bacterial
Atopobium vaginae
BVAB2, 3 (Bacterial vaginosis-associated
bacteria 2, 3); Mobiluncus spp.
Chlamydia trachomatis
Gardnerella vaginalis
Megasphaera (types 1, 2)
Mycoplasma genitalium
Mycoplasma hominis
Atopobium vaginae
BVAB2, 3 (Bacterial vaginosis-associated
bacteria 2, 3); Mobiluncus spp.
Chlamydia trachomatis
Gardnerella vaginalis
Megasphaera (types 1, 2)
Mycoplasma genitalium
Mycoplasma hominis
Neisseria gonorrhoeae
Ureaplasma urealyticum
Ureaplasma parvum
Viral
Herpes simplex virus 1
Herpes simplex virus 2
Protozoal
Trichomonas vaginalis
Ureaplasma urealyticum
Ureaplasma parvum
Viral
Herpes simplex virus 1
Herpes simplex virus 2
Protozoal
Trichomonas vaginalis
Fungal
Candida albicans, parapsilosis, tropicalis
Candida glabrata
Candida krusei
Resistance
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
Candida albicans, parapsilosis, tropicalis
Candida glabrata
Candida krusei
Resistance
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
ADD-ON: High Risk HPV types 16, 18, 45
SPECIMEN TYPES: Genital Ulcer/Lesion, Cervical/Vaginal/Cervicovaginal/Endometrial, Rectal/Anal, Oropharynx/Throat/Oral, Ulcer/Lesion
COMMON SIGNS & SYMPTOMS: Consider if patient presents with genital ulcer.
Bacterial
Chlamydia trachomatis
Haemophilus ducreyi
Treponema pallidum (Syphilis)
Chlamydia trachomatis
Haemophilus ducreyi
Treponema pallidum (Syphilis)
Viral
Herpes simplex virus 1
Herpes simplex virus 2
Mpox (Monkeypox)
Varicella zoster virus (Human Herpesvirus 3, VZV)
Herpes simplex virus 1
Herpes simplex virus 2
Mpox (Monkeypox)
Varicella zoster virus (Human Herpesvirus 3, VZV)
Resistance
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
SPECIMEN TYPES: Cervical/Vaginal/Cervicovaginal/Endometrial
COMMON SIGNS & SYMPTOMS: Consider if patient presents with lower abdominal pain, abnormal vaginal bleeding, urinary frequency, or vaginal discharge.
Bacterial
Actinomyces israelii
Chlamydia trachomatis
Mycoplasma genitalium
Actinomyces israelii
Chlamydia trachomatis
Mycoplasma genitalium
Mycoplasma hominis
Neisseria gonorrhoeae
Treponema pallidum (Syphilis)
Neisseria gonorrhoeae
Treponema pallidum (Syphilis)
Resistance
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
SWAB SITES: Rectal/Anal
COMMON SIGNS & SYMPTOMS: Consider if patient presents with rectal pain, bleeding, and/or bloody or purulent rectal discharge.
Bacterial
Chlamydia trachomatis
Neisseria gonorrhoeae
Treponema pallidum (Syphilis)
Chlamydia trachomatis
Neisseria gonorrhoeae
Treponema pallidum (Syphilis)
Viral
Herpes simplex virus 1
Herpes simplex virus 2
Mpox (Monkeypox)
Herpes simplex virus 1
Herpes simplex virus 2
Mpox (Monkeypox)
Resistance
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
SPECIMEN TYPES: Urine (voided), Urine (catheter), Urine (urethral), Cervical/Vaginal/Cervicovaginal/Endometrial, Vulva/Labia/Vestibule/Perineal, Rectal/Anal, Oropharynx/Throat/Oral, Penile, Genital Skin
COMMON SIGNS & SYMPTOMS: Consider if patient has high risk heterosexual behavior, high risk homosexual behavior, or suspected exposure to a sexually transmitted infection.
Bacterial
Chlamydia trachomatis
Neisseria gonorrhoeae
Chlamydia trachomatis
Neisseria gonorrhoeae
Protozoal
Trichomonas vaginalis
Trichomonas vaginalis
Gastrointestinal InfectionsGastrointestinal InfectionsSPECIMEN TYPES: Rectal (fecal), Stool
COMMON SIGNS & SYMPTOMS: Consider if patient presents with acute diarrhea ,+/- nausea, vomiting, fever, or abdominal pain that lasts less than 14 days.
Bacterial
Campylobacter coli, jejuni, upsaliensis
Clostridioides difficile (toxins A, B)
Clostridium perfringens
Enteroaggregative E. coli (EAEC)
Enteroinvasive E. coli (EIEC) / Shigella spp.
Enteropathogenic E. coli (EPEC)
Enterotoxigenic E. coli (ETEC)
Listeria monocytogenes
Plesiomonas shigelloides
Salmonella
Campylobacter coli, jejuni, upsaliensis
Clostridioides difficile (toxins A, B)
Clostridium perfringens
Enteroaggregative E. coli (EAEC)
Enteroinvasive E. coli (EIEC) / Shigella spp.
Enteropathogenic E. coli (EPEC)
Enterotoxigenic E. coli (ETEC)
Listeria monocytogenes
Plesiomonas shigelloides
Salmonella
Shiga toxin producing E. coli (STEC)
Shiga toxin producing E. coli O157 (STEC O157)
Vibrio cholerae, parahaemolyticus, vulnificus
Yersinia enterocolitica
Viral
Adenovirus F40/41
Astrovirus
Norovirus (Genogroup 1, 2)
Rotavirus A, B, C
Sapovirus
Shiga toxin producing E. coli O157 (STEC O157)
Vibrio cholerae, parahaemolyticus, vulnificus
Yersinia enterocolitica
Viral
Adenovirus F40/41
Astrovirus
Norovirus (Genogroup 1, 2)
Rotavirus A, B, C
Sapovirus
Resistance
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
ADD-ON: Candida albicans, parapsilosis, tropicalis, Candida glabrata, Candida krusei, Chlamydia trachomatis, Neisseria gonorrhoeae, Trichomonas vaginalis
SPECIMEN TYPES: Rectal (fecal), Stool
COMMON SIGNS & SYMPTOMS: Consider if patient presents with chronic diarrhea ,+/- nausea, vomiting, fever, or abdominal pain that lasts longer than 14 days.
Bacterial
Campylobacter coli, jejuni, upsaliensis
Clostridioides difficile (toxins A, B)
Clostridium perfringens
Enteroaggregative E. coli (EAEC)
Enteroinvasive E. coli (EIEC) / Shigella spp.
Enteropathogenic E. coli (EPEC)
Enterotoxigenic E. coli (ETEC)
Listeria monocytogenes
Plesiomonas shigelloides
Salmonella
Shiga toxin producing E. coli (STEC)
Shiga toxin producing E. coli O157 (STEC O157)
Vibrio cholerae, parahaemolyticus, vulnificus
Yersinia enterocolitica
Campylobacter coli, jejuni, upsaliensis
Clostridioides difficile (toxins A, B)
Clostridium perfringens
Enteroaggregative E. coli (EAEC)
Enteroinvasive E. coli (EIEC) / Shigella spp.
Enteropathogenic E. coli (EPEC)
Enterotoxigenic E. coli (ETEC)
Listeria monocytogenes
Plesiomonas shigelloides
Salmonella
Shiga toxin producing E. coli (STEC)
Shiga toxin producing E. coli O157 (STEC O157)
Vibrio cholerae, parahaemolyticus, vulnificus
Yersinia enterocolitica
Viral
Adenovirus F40/41
Astrovirus
Norovirus (Genogroup 1, 2)
Rotavirus A, B, C
Sapovirus
Protozoal
Cryptosporidium
Cyclospora cayetanensis
Dientamoeba fragilis
Entamoeba histolytica
Giardia lamblia (intestinalis)
Microsporidium (Enterocytozoon bieneusi,
Encephalitozoon intestinalis)
Adenovirus F40/41
Astrovirus
Norovirus (Genogroup 1, 2)
Rotavirus A, B, C
Sapovirus
Protozoal
Cryptosporidium
Cyclospora cayetanensis
Dientamoeba fragilis
Entamoeba histolytica
Giardia lamblia (intestinalis)
Microsporidium (Enterocytozoon bieneusi,
Encephalitozoon intestinalis)
Resistance
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
ADD-ON: Candida albicans, parapsilosis, tropicalis, Candida glabrata, Candida krusei, Chlamydia trachomatis, Neisseria gonorrhoeae, Trichomonas vaginalis
Wound InfectionsWound InfectionsSPECIMEN TYPES: Wound Swabs (all locations)
COMMON SIGNS & SYMPTOMS: Consider if patient presents with skin erythema, edema, warmth, or cellulitis.
Bacterial
Acinetobacter baumannii
Bacteroides fragilis, vulgatus
Citrobacter freundii
Clostridium perfringens, novyi, septicum
Corynebacterium jeikeium, striatum,
tuberculostearicum
Cutibacterium (Propionibacterium) acnes
Enterobacter cloacae complex,
Klebsiella (Enterobacter) aerogenes
Enterococcus faecalis, faecium
Escherichia coli
Haemophilus influenzae
Klebsiella pneumoniae, oxytoca
Mycoplasma genitalium, hominis
Peptostreptococcus anaerobius,
Peptoniphilus asaccharolyticus,
Finegoldia magna,
Anaerococcus prevotii
Proteus mirabilis, vulgaris
Acinetobacter baumannii
Bacteroides fragilis, vulgatus
Citrobacter freundii
Clostridium perfringens, novyi, septicum
Corynebacterium jeikeium, striatum,
tuberculostearicum
Cutibacterium (Propionibacterium) acnes
Enterobacter cloacae complex,
Klebsiella (Enterobacter) aerogenes
Enterococcus faecalis, faecium
Escherichia coli
Haemophilus influenzae
Klebsiella pneumoniae, oxytoca
Mycoplasma genitalium, hominis
Peptostreptococcus anaerobius,
Peptoniphilus asaccharolyticus,
Finegoldia magna,
Anaerococcus prevotii
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Salmonella enterica
Serratia marcescens
Staphylococcus aureus
Staphylococcus epidermidis, haemolyticus,
lugdunensis, saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pneumoniae
Streptococcus pyogenes (Group A Strep)
Vibrio cholerae, parahaemolyticus, vulnificus
Viral
Herpes simplex virus 1
Herpes simplex virus 2
Varicella zoster virus (Human Herpesvirus 3, VZV)
Herpes simplex virus 1
Herpes simplex virus 2
Varicella zoster virus (Human Herpesvirus 3, VZV)
Fungal
Aspergillus flavus, fumigatus, niger, terreus
Candida albicans, glabrata, parapsilosis,
tropicalis
Epidermophyton floccosum
Fusarium oxysporum, solani
Aspergillus flavus, fumigatus, niger, terreus
Candida albicans, glabrata, parapsilosis,
tropicalis
Epidermophyton floccosum
Fusarium oxysporum, solani
Malassezia furfur, restricta, sympodialis,
globosa
Microsporum audouinii, canis, gypseum
Trichophyton mentagrophytes/
interdigitale, rubrum, soudanense, terrestre,
tonsurans, verrucosum, violaceum
Trichosporon mucoides, asahii
Resistance
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
Bacterial
Acinetobacter baumannii
Bacteroides fragilis, vulgatus
Citrobacter freundii
Clostridium perfringens, novyi, septicum
Corynebacterium jeikeium, striatum,
tuberculostearicum
Cutibacterium (Propionibacterium) acnes
Enterobacter cloacae complex,
Klebsiella (Enterobacter) aerogenes
Enterococcus faecalis, faecium
Escherichia coli
Haemophilus influenzae
Klebsiella pneumoniae, oxytoca
Mycoplasma genitalium, hominis
Peptostreptococcus anaerobius,
Peptoniphilus asaccharolyticus,
Finegoldia magna,
Anaerococcus prevotii
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Salmonella enterica
Serratia marcescens
Staphylococcus aureus
Staphylococcus epidermidis, haemolyticus,
lugdunensis, saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pneumoniae
Streptococcus pyogenes (Group A Strep)
Vibrio cholerae, parahaemolyticus, vulnificus
Acinetobacter baumannii
Bacteroides fragilis, vulgatus
Citrobacter freundii
Clostridium perfringens, novyi, septicum
Corynebacterium jeikeium, striatum,
tuberculostearicum
Cutibacterium (Propionibacterium) acnes
Enterobacter cloacae complex,
Klebsiella (Enterobacter) aerogenes
Enterococcus faecalis, faecium
Escherichia coli
Haemophilus influenzae
Klebsiella pneumoniae, oxytoca
Mycoplasma genitalium, hominis
Peptostreptococcus anaerobius,
Peptoniphilus asaccharolyticus,
Finegoldia magna,
Anaerococcus prevotii
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Salmonella enterica
Serratia marcescens
Staphylococcus aureus
Staphylococcus epidermidis, haemolyticus,
lugdunensis, saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pneumoniae
Streptococcus pyogenes (Group A Strep)
Vibrio cholerae, parahaemolyticus, vulnificus
Viral
Herpes simplex virus 1
Herpes simplex virus 2
Varicella zoster virus (Human Herpesvirus 3, VZV)
Herpes simplex virus 1
Herpes simplex virus 2
Varicella zoster virus (Human Herpesvirus 3, VZV)
Fungal
Aspergillus flavus, fumigatus, niger, terreus
Candida albicans, glabrata, parapsilosis,
tropicalis
Epidermophyton floccosum
Fusarium oxysporum, solani
Malassezia furfur, restricta, sympodialis,
globosa
Microsporum audouinii, canis, gypseum
Trichophyton mentagrophytes/
interdigitale, rubrum, soudanense, terrestre,
tonsurans, verrucosum, violaceum
Trichosporon mucoides, asahii
Aspergillus flavus, fumigatus, niger, terreus
Candida albicans, glabrata, parapsilosis,
tropicalis
Epidermophyton floccosum
Fusarium oxysporum, solani
Malassezia furfur, restricta, sympodialis,
globosa
Microsporum audouinii, canis, gypseum
Trichophyton mentagrophytes/
interdigitale, rubrum, soudanense, terrestre,
tonsurans, verrucosum, violaceum
Trichosporon mucoides, asahii
Resistance
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
ADD-ON: Mpox (Monkeypox), Candida auris
SWAB SITES: Wound Swabs (all locations)
COMMON SIGNS & SYMPTOMS: Patient presents with a recent wound resulting from penetrating trauma with erythema, edema, heat, purulent exudate and/or pain.
Bacterial
Acinetobacter baumannii
Bacteroides fragilis, vulgatus
Citrobacter freundii
Clostridium perfringens, novyi, septicum
Enterobacter cloacae complex,
Klebsiella (Enterobacter) aerogenes
Enterococcus faecalis, faecium
Escherichia coli
Klebsiella pneumoniae, oxytoca
Acinetobacter baumannii
Bacteroides fragilis, vulgatus
Citrobacter freundii
Clostridium perfringens, novyi, septicum
Enterobacter cloacae complex,
Klebsiella (Enterobacter) aerogenes
Enterococcus faecalis, faecium
Escherichia coli
Klebsiella pneumoniae, oxytoca
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Salmonella enterica
Serratia marcescens
Staphylococcus aureus
Streptococcus agalactiae (Group B Strep)
Streptococcus pyogenes (Group A Strep)
Vibrio cholerae, parahaemolyticus, vulnificus
Pseudomonas aeruginosa
Salmonella enterica
Serratia marcescens
Staphylococcus aureus
Streptococcus agalactiae (Group B Strep)
Streptococcus pyogenes (Group A Strep)
Vibrio cholerae, parahaemolyticus, vulnificus
Resistance
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
ADD-ON: Mpox (Monkeypox), Herpes simplex virus 1, Herpes simplex virus 2, Varicella zoster virus (Human Herpesvirus 3, VZV)
SPECIMEN TYPES: Wound Swabs (all locations)
COMMON SIGNS & SYMPTOMS: Consider if patient presents with scaly ring-shaped area, itchiness, scaly skin, or noninflamed dermatosis on the body or hair follicle (tinea capitis or tinea barbae).
Fungal
Candida albicans, glabrata, parapsilosis,
tropicalis
Epidermophyton floccosum
Candida albicans, glabrata, parapsilosis,
tropicalis
Epidermophyton floccosum
Malassezia furfur, restricta,
sympodialis, globosa
Microsporum audouinii, canis, gypseum
sympodialis, globosa
Microsporum audouinii, canis, gypseum
Trichophyton mentagrophytes/interdigitale,
rubrum, soudanense, terrestre, tonsurans,
verrucosum, violaceum
rubrum, soudanense, terrestre, tonsurans,
verrucosum, violaceum
Fungal
Candida albicans, glabrata, parapsilosis, tropicalis
Epidermophyton floccosum
Malassezia furfur, restricta, sympodialis, globosa
Microsporum audouinii, canis, gypseum
Trichophyton mentagrophytes/interdigitale,
rubrum, soudanense, terrestre, tonsurans,
verrucosum, violaceum
Candida albicans, glabrata, parapsilosis, tropicalis
Epidermophyton floccosum
Malassezia furfur, restricta, sympodialis, globosa
Microsporum audouinii, canis, gypseum
Trichophyton mentagrophytes/interdigitale,
rubrum, soudanense, terrestre, tonsurans,
verrucosum, violaceum
OnychomycosisOnychomycosisSPECIMEN TYPES: Nail (toe), Nail (finger)
COMMON SIGNS & SYMPTOMS: Minor skin disorder presenting with nail discoloration (yellow, white, or brown), dystrophy (deformed), thickening, or onycholysis (separation from nail bed).
Bacterial
Pseudomonas aeruginosa
Fungal
Aspergillus flavus, fumigatus, niger, terreus
Candida albicans, glabrata, parapsilosis,
tropicalis
Epidermophyton floccosum
Fusarium oxysporum, solani
Malassezia furfur, restricta, sympodialis,
globosa
Pseudomonas aeruginosa
Fungal
Aspergillus flavus, fumigatus, niger, terreus
Candida albicans, glabrata, parapsilosis,
tropicalis
Epidermophyton floccosum
Fusarium oxysporum, solani
Malassezia furfur, restricta, sympodialis,
globosa
Microsporum audouinii, canis, gypseum
Trichophyton mentagrophytes/
interdigitale, rubrum, soudanense, terrestre,
tonsurans, verrucosum, violaceum
Trichosporon mucoides, asahii
Trichophyton mentagrophytes/
interdigitale, rubrum, soudanense, terrestre,
tonsurans, verrucosum, violaceum
Trichosporon mucoides, asahii
Resistance
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
OtolaryngologyOtolaryngologySPECIMEN TYPES: Nasopharyngeal/Nares, Oropharynx/Throat/Oral, Ear, Sino-Nasal
COMMON SIGNS & SYMPTOMS: Consider if patient presents with chronic or complicated ear, nose, or throat infection.
Bacterial
Acinetobacter baumannii
Bordetella pertussis, parapertussis,
bronchiseptica
Chlamydia trachomatis
Cutibacterium (Propionibacterium) acnes
Enterobacter cloacae complex,
Klebsiella (Enterobacter) aerogenes
Enterococcus faecalis, faecium
Escherichia coli
Fusobacterium nucleatum, necrophorum
Haemophilus influenzae
Klebsiella pneumoniae, oxytoca
Moraxella catarrhalis
Neisseria gonorrhoeae
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Acinetobacter baumannii
Bordetella pertussis, parapertussis,
bronchiseptica
Chlamydia trachomatis
Cutibacterium (Propionibacterium) acnes
Enterobacter cloacae complex,
Klebsiella (Enterobacter) aerogenes
Enterococcus faecalis, faecium
Escherichia coli
Fusobacterium nucleatum, necrophorum
Haemophilus influenzae
Klebsiella pneumoniae, oxytoca
Moraxella catarrhalis
Neisseria gonorrhoeae
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Staphylococcus aureus
Staphylococcus epidermidis, haemolyticus,
lugdunensis, saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pneumoniae
Streptococcus pyogenes (Group A Strep)
Viral
Adenovirus
Cytomegalovirus (Human Herpesvirus 5, CMV)
Enterovirus (pan)
Epstein-Barr Virus (Human Herpesvirus 4, EBV)
Herpes simplex virus 1, 2
Parainfluenza virus (types 1, 2, 3, 4)
Varicella zoster virus (Human Herpesvirus 3, VZV)
Staphylococcus epidermidis, haemolyticus,
lugdunensis, saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pneumoniae
Streptococcus pyogenes (Group A Strep)
Viral
Adenovirus
Cytomegalovirus (Human Herpesvirus 5, CMV)
Enterovirus (pan)
Epstein-Barr Virus (Human Herpesvirus 4, EBV)
Herpes simplex virus 1, 2
Parainfluenza virus (types 1, 2, 3, 4)
Varicella zoster virus (Human Herpesvirus 3, VZV)
Fungal
Alternaria spp., Curvularia lunata,
Penicillium spp.
Aspergillus flavus, fumigatus, niger, terreus
Candida albicans, glabrata, parapsilosis,
tropicalis
Fusarium oxysporum, solani
Resistance
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
Alternaria spp., Curvularia lunata,
Penicillium spp.
Aspergillus flavus, fumigatus, niger, terreus
Candida albicans, glabrata, parapsilosis,
tropicalis
Fusarium oxysporum, solani
Resistance
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
OphthalmologyOphthalmologySPECIMEN TYPES: Eye (external swab), Eye (internal fluid aspirate)
COMMON SIGNS & SYMPTOMS: Consider if patient presents with eye pain, eye redness, blurred vision, sensitivity to light, excessive tearing, and/or eye discharge.
Bacterial
Acinetobacter baumannii
Bacillus cereus, thuringiensis
Chlamydia trachomatis
Citrobacter freundii
Cutibacterium (Propionibacterium) acnes
Enterobacter cloacae complex, Klebsiella
(Enterobacter) aerogenes
Enterococcus faecalis, faecium
Escherichia coli
Fusobacterium nucleatum, necrophorum
Haemophilus influenzae
Klebsiella pneumoniae, oxytoca
Moraxella catarrhalis
Morganella morganii
Neisseria gonorrhoeae
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Staphylococcus aureus
Acinetobacter baumannii
Bacillus cereus, thuringiensis
Chlamydia trachomatis
Citrobacter freundii
Cutibacterium (Propionibacterium) acnes
Enterobacter cloacae complex, Klebsiella
(Enterobacter) aerogenes
Enterococcus faecalis, faecium
Escherichia coli
Fusobacterium nucleatum, necrophorum
Haemophilus influenzae
Klebsiella pneumoniae, oxytoca
Moraxella catarrhalis
Morganella morganii
Neisseria gonorrhoeae
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Staphylococcus aureus
Staphylococcus epidermidis, haemolyticus,
lugdunensis, saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pneumoniae
Streptococcus pyogenes (Group A Strep)
Viral
Adenovirus
Cytomegalovirus (Human Herpesvirus 5, CMV)
Enterovirus (pan)
Epstein-Barr virus (Human Herpesvirus 4, EBV)
Herpes simplex virus 1, 2
Varicella zoster virus (Human Herpesvirus 3, VZV)
Protozoal
Acanthamoeba castellani, polyphaga;
Vermamoeba (Hartmannella) vermiformis
lugdunensis, saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pneumoniae
Streptococcus pyogenes (Group A Strep)
Viral
Adenovirus
Cytomegalovirus (Human Herpesvirus 5, CMV)
Enterovirus (pan)
Epstein-Barr virus (Human Herpesvirus 4, EBV)
Herpes simplex virus 1, 2
Varicella zoster virus (Human Herpesvirus 3, VZV)
Protozoal
Acanthamoeba castellani, polyphaga;
Vermamoeba (Hartmannella) vermiformis
Fungal
Alternaria spp., Curvularia lunata,
Penicillium spp.
Aspergillus flavus, fumigatus, niger, terreus
Candida albicans, glabrata, parapsilosis,
tropicalis
Fusarium oxysporum, solani
Microsporidia (Encephalitozoon hellum,
cuniculi, Nosema (Vittaforma) ocularum)
Resistance
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
Alternaria spp., Curvularia lunata,
Penicillium spp.
Aspergillus flavus, fumigatus, niger, terreus
Candida albicans, glabrata, parapsilosis,
tropicalis
Fusarium oxysporum, solani
Microsporidia (Encephalitozoon hellum,
cuniculi, Nosema (Vittaforma) ocularum)
Resistance
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
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1 Internal Clinical Data
