HealthTrackRx’s RT-PCR testing platform empowers providers with fast, accurate pathogen detection across a comprehensive menu of common infections. Our syndromic-based test offerings are tailored specifically to outpatient care settings—grouping pathogens by symptom presentation to enable more targeted, clinically relevant diagnostics. From respiratory to genitourinary panels, we deliver results next morning, complete with actionable insights—including antibiotic resistance gene detection—to support precision medicine and avoid unnecessary empiric prescribing.
Comprehensive PCR Testing
HealthTrackRx’s RT-PCR testing platform empowers providers with fast, accurate pathogen detection across a comprehensive menu of common infections. Our syndromic-based test offerings are tailored specifically to outpatient care settings—grouping pathogens by symptom presentation to enable more targeted, clinically relevant diagnostics. From respiratory to genitourinary panels, we deliver results next morning, complete with actionable insights—including antibiotic resistance gene detection—to support precision medicine and avoid unnecessary empiric prescribing.
Head-to-Toe PCR Menus
Our pathogen assay covers the most relevant viral, bacterial, and fungal pathogens, providing solutions tailored to your diagnostic needs.
Our Menus
Extended Respiratory Viral / Acute Rhinosinusitis
Specimen Types:
Nasopharyngeal/Nares, Oropharynx/Throat/Oral, Cough Sputum
Common Signs + Symptoms:
Acute upper respiratory tract infection, high-grade fever, acute cough, runny nose, pain in throat, wheezing, or nasal congestion.
Viral:
- Adenovirus
- Coronaviruses (229E, HKU1, NL63, & OC43)
- COVID-19 Coronavirus (SARS-CoV-2)
- Enterovirus D68
- Human metapneumovirus
- Influenza virus A, B
- Parainfluenza virus (types 1, 2, 3, 4)
- Respiratory syncytial virus
- Rhinovirus/Enterovirus
Treatable Respiratory Viruses
Specimen Types:
Nasopharyngeal/Nares, Oropharynx/Throat/Oral, Cough Sputum
Common Signs + Symptoms:
Acute upper respiratory tract Infection, high-grade fever, cough, runny nose, pain in throat, wheezing, nasal congestion, shortness of breath, malaise.
Viral:
- COVID-19 Coronavirus (SARS-CoV-2)
- Influenza virus A, B
- Respiratory syncytial virus
Pharyngitis / Laryngitis
Specimen Types:
Oropharynx/Throat/Oral
Common Signs + Symptoms:
Pain in throat, fever, pharyngeal edema, patchy tonsillar exudates, and tender/swollen anterior cervical lymph nodes.
Bacterial:
- Chlamydia pneumoniae
- Fusobacterium nucleatum, necrophorum
- Mycoplasma pneumoniae
- Streptococcus dysgalactiae (Group C & G Strep)
- Streptococcus pyogenes (Group A Strep)
Viral:
- Adenovirus
- Coronaviruses (229E, HKU1, NL63, & OC43)
- COVID-19 Coronavirus (SARS-CoV-2)
- Enterovirus D68
- Human metapneumovirus
- Influenza virus A, B
- Parainfluenza virus (types 1, 2, 3, 4)
- Respiratory syncytial virus
- Rhinovirus/Enterovirus
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
ADD-ON:
Epstein-Barr Virus (Human Herpesvirus 4, EBV), Herpes simplex virus 1, Herpes simplex virus 2
Bronchitis
Specimen Types:
Nasopharyngeal/Nares, Oropharynx/Throat/Oral, Cough Sputum
Common Signs + Symptoms:
Upper or lower respiratory tract infection, including cough, moderate temperature elevation, and mucopurulent sputum.
Bacterial:
- Haemophilus influenzae
- Moraxella catarrhalis
- Streptococcus pneumoniae
Atypical Bacteria:
- Bordetella pertussis, parapertussis, bronchiseptica
- Chlamydia pneumoniae
- Mycoplasma pneumoniae
Viral:
- Adenovirus
- Coronaviruses (229E, HKU1, NL63, & OC43)
- COVID-19 Coronavirus (SARS-CoV-2)
- Enterovirus D68
- Human metapneumovirus
- Influenza virus A, B
- Parainfluenza virus (types 1, 2, 3, 4)
- Respiratory syncytial virus
- Rhinovirus/Enterovirus
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
ADD-ON:
Epstein-Barr Virus (Human Herpesvirus 4, EBV)
Pneumonia
Specimen Types:
Cough Sputum, Oropharynx/Throat/Oral, Nasopharyngeal/Nares
Common Signs + Symptoms:
Lower respiratory tract infection, high-grade fever, dyspnea, cough, sputum production, or hypoxia & chest x-ray opacity.
Bacterial:
- Acinetobacter baumannii
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Escherichia coli
- Haemophilus influenzae
- Klebsiella pneumoniae, oxytoca
- Moraxella catarrhalis
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Serratia marcescens
- Staphylococcus aureus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pneumoniae
- Streptococcus pyogenes (Group A Strep)
Atypical Bacteria:
- Bordetella pertussis, parapertussis, bronchiseptica
- Chlamydia pneumoniae
- Legionella pneumophila
- Mycoplasma pneumoniae
Viral:
- Adenovirus
- Coronaviruses (229E, HKU1, NL63, & OC43)
- COVID-19 Coronavirus (SARS-CoV-2)
- Enterovirus D68
- Human metapneumovirus
- Influenza virus A, B
- Parainfluenza virus (types 1, 2, 3, 4)
- Respiratory syncytial virus
- Rhinovirus/Enterovirus
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
Acute Otitis Media / Mastoiditis
Specimen Types:
Ear, Nasopharyngeal/Nares
Common Signs + Symptoms:
Otitis media, ear pain, decreased or muffled hearing, bulging ear drum, drainage from ear, mastoiditis, redness or swelling behind ear lobe, fever, headache, or hearing loss.
Bacterial:
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Fusobacterium nucleatum, necrophorum
- Haemophilus influenzae
- Klebsiella pneumoniae, oxytoca
- Moraxella catarrhalis
- Mycoplasma pneumoniae
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Staphylococcus aureus
- Streptococcus pneumoniae
- Streptococcus pyogenes (Group A Strep)
Viral:
- Adenovirus
- Coronaviruses (229E, HKU1, NL63, & OC43)
- COVID-19 Coronavirus (SARS-CoV-2)
- Enterovirus D68
- Human metapneumovirus
- Influenza virus A, B
- Parainfluenza virus (types 1, 2, 3, 4)
- Respiratory syncytial virus
- Rhinovirus/Enterovirus
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
Extended Respiratory Viral / Acute Rhinosinusitis
Specimen Types:
Nasopharyngeal/Nares, Oropharynx/Throat/Oral, Cough Sputum
Common Signs + Symptoms:
Acute upper respiratory tract infection, high-grade fever, acute cough, runny nose, pain in throat, wheezing, or nasal congestion.
Viral:
- Adenovirus
- Coronaviruses (229E, HKU1, NL63, & OC43)
- COVID-19 Coronavirus (SARS-CoV-2)
- Enterovirus D68
- Human metapneumovirus
- Influenza virus A, B
- Parainfluenza virus (types 1, 2, 3, 4)
- Respiratory syncytial virus
- Rhinovirus/Enterovirus
Treatable Respiratory Viruses
Specimen Types:
Nasopharyngeal/Nares, Oropharynx/Throat/Oral, Cough Sputum
Common Signs + Symptoms:
Acute upper respiratory tract Infection, high-grade fever, cough, runny nose, pain in throat, wheezing, nasal congestion, shortness of breath, malaise.
Viral:
- COVID-19 Coronavirus (SARS-CoV-2)
- Influenza virus A, B
- Respiratory syncytial virus
Pharyngitis / Laryngitis
Specimen Types:
Oropharynx/Throat/Oral
Common Signs + Symptoms:
Pain in throat, fever, pharyngeal edema, patchy tonsillar exudates, and tender/swollen anterior cervical lymph nodes.
Bacterial:
- Chlamydia pneumoniae
- Fusobacterium nucleatum, necrophorum
- Mycoplasma pneumoniae
- Streptococcus dysgalactiae (Group C & G Strep)
- Streptococcus pyogenes (Group A Strep)
Viral:
- Adenovirus
- Coronaviruses (229E, HKU1, NL63, & OC43)
- COVID-19 Coronavirus (SARS-CoV-2)
- Enterovirus D68
- Human metapneumovirus
- Influenza virus A, B
- Parainfluenza virus (types 1, 2, 3, 4)
- Respiratory syncytial virus
- Rhinovirus/Enterovirus
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
ADD-ON:
Epstein-Barr Virus (Human Herpesvirus 4, EBV), Herpes simplex virus 1, Herpes simplex virus 2
Bronchitis
Specimen Types:
Nasopharyngeal/Nares, Oropharynx/Throat/Oral, Cough Sputum
Common Signs + Symptoms:
Upper or lower respiratory tract infection, including cough, moderate temperature elevation, and mucopurulent sputum.
Bacterial:
- Haemophilus influenzae
- Moraxella catarrhalis
- Streptococcus pneumoniae
Atypical Bacteria:
- Bordetella pertussis, parapertussis, bronchiseptica
- Chlamydia pneumoniae
- Mycoplasma pneumoniae
Viral:
- Adenovirus
- Coronaviruses (229E, HKU1, NL63, & OC43)
- COVID-19 Coronavirus (SARS-CoV-2)
- Enterovirus D68
- Human metapneumovirus
- Influenza virus A, B
- Parainfluenza virus (types 1, 2, 3, 4)
- Respiratory syncytial virus
- Rhinovirus/Enterovirus
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
ADD-ON:
Epstein-Barr Virus (Human Herpesvirus 4, EBV)
Pneumonia
Specimen Types:
Cough Sputum, Oropharynx/Throat/Oral, Nasopharyngeal/Nares
Common Signs + Symptoms:
Lower respiratory tract infection, high-grade fever, dyspnea, cough, sputum production, or hypoxia & chest x-ray opacity.
Bacterial:
- Acinetobacter baumannii
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Escherichia coli
- Haemophilus influenzae
- Klebsiella pneumoniae, oxytoca
- Moraxella catarrhalis
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Serratia marcescens
- Staphylococcus aureus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pneumoniae
- Streptococcus pyogenes (Group A Strep)
Atypical Bacteria:
- Bordetella pertussis, parapertussis, bronchiseptica
- Chlamydia pneumoniae
- Legionella pneumophila
- Mycoplasma pneumoniae
Viral:
- Adenovirus
- Coronaviruses (229E, HKU1, NL63, & OC43)
- COVID-19 Coronavirus (SARS-CoV-2)
- Enterovirus D68
- Human metapneumovirus
- Influenza virus A, B
- Parainfluenza virus (types 1, 2, 3, 4)
- Respiratory syncytial virus
- Rhinovirus/Enterovirus
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
Acute Otitis Media / Mastoiditis
Specimen Types:
Ear, Nasopharyngeal/Nares
Common Signs + Symptoms:
Otitis media, ear pain, decreased or muffled hearing, bulging ear drum, drainage from ear, mastoiditis, redness or swelling behind ear lobe, fever, headache, or hearing loss.
Bacterial:
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Fusobacterium nucleatum, necrophorum
- Haemophilus influenzae
- Klebsiella pneumoniae, oxytoca
- Moraxella catarrhalis
- Mycoplasma pneumoniae
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Staphylococcus aureus
- Streptococcus pneumoniae
- Streptococcus pyogenes (Group A Strep)
Viral:
- Adenovirus
- Coronaviruses (229E, HKU1, NL63, & OC43)
- COVID-19 Coronavirus (SARS-CoV-2)
- Enterovirus D68
- Human metapneumovirus
- Influenza virus A, B
- Parainfluenza virus (types 1, 2, 3, 4)
- Respiratory syncytial virus
- Rhinovirus/Enterovirus
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
Ophthalmology
Specimen Types:
Eye (external)
Common Signs + Symptoms:
Eye pain, eye redness, blurred vision, sensitivity to light, excessive tearing, and/or eye discharge.
Bacterial:
- Acinetobacter baumannii
- Chlamydia trachomatis
- Citrobacter freundii
- Cutibacterium (Propionibacterium) acnes
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Fusarium oxysporum, Neocosmospora solani
- Haemophilus influenzae
- Klebsiella pneumoniae, oxytoca
- Moraxella catarrhalis
- Neisseria gonorrhoeae
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Staphylococcus aureus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pneumoniae
- Streptococcus pyogenes (Group A Strep)
Viral:
- Adenovirus
- Cytomegalovirus (Human Herpesvirus 5, CMV)
- Enterovirus (pan)
- Epstein-Barr virus (Human Herpesvirus 4, EBV)
- Herpes simplex virus 1, 2
- Varicella zoster virus (Human Herpesvirus 3, VZV)
Protozoal:
- Acanthamoeba castellani, polyphaga; Vermamoeba (Hartmannella) vermiformis
- Microsporidia (Encephalitozoon hellum, cuniculi, Nosema (Vittaforma) ocularum)
Fungal:
- Aspergillus flavus, fumigatus, niger, terreus
- Candida albicans, glabrata, parapsilosis, tropicalis
- Fusarium oxysporum, Neocosmospora solani
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
Ophthalmology
Specimen Types:
Eye (external)
Common Signs + Symptoms:
Eye pain, eye redness, blurred vision, sensitivity to light, excessive tearing, and/or eye discharge.
Bacterial:
- Acinetobacter baumannii
- Chlamydia trachomatis
- Citrobacter freundii
- Cutibacterium (Propionibacterium) acnes
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Fusarium oxysporum, Neocosmospora solani
- Haemophilus influenzae
- Klebsiella pneumoniae, oxytoca
- Moraxella catarrhalis
- Neisseria gonorrhoeae
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Staphylococcus aureus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pneumoniae
- Streptococcus pyogenes (Group A Strep)
Viral:
- Adenovirus
- Cytomegalovirus (Human Herpesvirus 5, CMV)
- Enterovirus (pan)
- Epstein-Barr virus (Human Herpesvirus 4, EBV)
- Herpes simplex virus 1, 2
- Varicella zoster virus (Human Herpesvirus 3, VZV)
Protozoal:
- Acanthamoeba castellani, polyphaga; Vermamoeba (Hartmannella) vermiformis
- Microsporidia (Encephalitozoon hellum, cuniculi, Nosema (Vittaforma) ocularum)
Fungal:
- Aspergillus flavus, fumigatus, niger, terreus
- Candida albicans, glabrata, parapsilosis, tropicalis
- Fusarium oxysporum, Neocosmospora solani
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
Otolaryngology
Specimen Types:
Nasopharyngeal/Nares, Oropharynx/Throat/Oral, Ear, Sino-Nasal
Common Signs + Symptoms:
Chronic or complicated ear, nose, or throat infection.
Bacterial:
- Cutibacterium (Propionibacterium) acnes
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Fusobacterium nucleatum, necrophorum
- Haemophilus influenzae
- Klebsiella pneumoniae, oxytoca
- Moraxella catarrhalis
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Staphylococcus aureus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pneumoniae
- Streptococcus pyogenes (Group A Strep)
Viral:
- Adenovirus
- Cytomegalovirus (Human Herpesvirus 5, CMV)
- Enterovirus (pan)
- Epstein-Barr Virus (Human Herpesvirus 4, EBV)
- Herpes simplex virus 1, 2
- Varicella zoster virus (Human Herpesvirus 3, VZV)
Fungal:
- Aspergillus flavus, fumigatus, niger, terreus
- Candida albicans, glabrata, parapsilosis, tropicalis
- Fusarium oxysporum, Neocosmospora solani
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
Otolaryngology
Specimen Types:
Nasopharyngeal/Nares, Oropharynx/Throat/Oral, Ear, Sino-Nasal
Common Signs + Symptoms:
Chronic or complicated ear, nose, or throat infection.
Bacterial:
- Cutibacterium (Propionibacterium) acnes
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Fusobacterium nucleatum, necrophorum
- Haemophilus influenzae
- Klebsiella pneumoniae, oxytoca
- Moraxella catarrhalis
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Staphylococcus aureus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pneumoniae
- Streptococcus pyogenes (Group A Strep)
Viral:
- Adenovirus
- Cytomegalovirus (Human Herpesvirus 5, CMV)
- Enterovirus (pan)
- Epstein-Barr Virus (Human Herpesvirus 4, EBV)
- Herpes simplex virus 1, 2
- Varicella zoster virus (Human Herpesvirus 3, VZV)
Fungal:
- Aspergillus flavus, fumigatus, niger, terreus
- Candida albicans, glabrata, parapsilosis, tropicalis
- Fusarium oxysporum, Neocosmospora solani
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
Superficial Wound
Specimen Types:
Wound Swabs (all locations)
Common Signs + Symptoms:
Recent wound from trauma with erythema, edema, heat, purulent exudate, and/or pain
Bacterial:
- Acinetobacter baumannii
- Bacteroides fragilis, Phocaeicola vulgatus
- Citrobacter freundii
- Clostridium perfringens, novyi, septicum
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Klebsiella pneumoniae, oxytoca
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Serratia marcescens
- Staphylococcus aureus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pyogenes (Group A Strep)
- Vibrio cholerae, parahaemolyticus, vulnificus
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
ADD-ON:
Mpox (Monkeypox), Herpes simplex virus 1, Herpes simplex virus 2, Varicella zoster virus (Human Herpesvirus 3, VZV)
Deep/Non-Healing Wound
Specimen Types:
Wound Swabs (all locations)
Common Signs + Symptoms:
Diabetic ulcer, tunneling wound, skin erythema, edema, warmth, abscess, or cellulitis
Bacterial:
- Acinetobacter baumannii
- Bacteroides fragilis, Phocaeicola vulgatus
- Citrobacter freundii
- Clostridium perfringens, novyi, septicum
- Corynebacterium jeikeium, striatum, tuberculostearicum
- Cutibacterium (Propionibacterium) acnes
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Klebsiella pneumoniae, oxytoca
- Peptostreptococcus anaerobius, Peptoniphilus asaccharolyticus, Finegoldia magna, Anaerococcus prevotii
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Serratia marcescens
- Staphylococcus aureus
- Staphylococcus epidermidis, haemolyticus, lugdunensis, saprophyticus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pyogenes (Group A Strep)
- Vibrio cholerae, parahaemolyticus, vulnificus
Viral:
- Herpes simplex virus 1
- Herpes simplex virus 2
- Varicella zoster virus (Human Herpesvirus 3, VZV)
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
Tinea
Specimen Types:
Wound Swabs (all locations)
Common Signs + Symptoms:
Scaly ring-shaped area, itchiness, scaly skin, or noninflamed dermatosis on the body or hair follicle (tinea capitis or tinea barbae)
Fungal:
- Candida albicans, glabrata, parapsilosis, tropicalis
- Epidermophyton floccosum
- Malassezia furfur, restricta, sympodialis, globosa
- Microsporum audouinii, canis; Nannizzia gypseum
- Trichophyton mentagrophytes/interdigitale, rubrum, tonsurans, violaceum
ADD-ON:
Candida auris
Superficial Wound
Specimen Types:
Wound Swabs (all locations)
Common Signs + Symptoms:
Recent wound from trauma with erythema, edema, heat, purulent exudate, and/or pain
Bacterial:
- Acinetobacter baumannii
- Bacteroides fragilis, Phocaeicola vulgatus
- Citrobacter freundii
- Clostridium perfringens, novyi, septicum
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Klebsiella pneumoniae, oxytoca
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Serratia marcescens
- Staphylococcus aureus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pyogenes (Group A Strep)
- Vibrio cholerae, parahaemolyticus, vulnificus
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
ADD-ON:
Mpox (Monkeypox), Herpes simplex virus 1, Herpes simplex virus 2, Varicella zoster virus (Human Herpesvirus 3, VZV)
Deep/Non-Healing Wound
Specimen Types:
Wound Swabs (all locations)
Common Signs + Symptoms:
Diabetic ulcer, tunneling wound, skin erythema, edema, warmth, abscess, or cellulitis
Bacterial:
- Acinetobacter baumannii
- Bacteroides fragilis, Phocaeicola vulgatus
- Citrobacter freundii
- Clostridium perfringens, novyi, septicum
- Corynebacterium jeikeium, striatum, tuberculostearicum
- Cutibacterium (Propionibacterium) acnes
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Klebsiella pneumoniae, oxytoca
- Peptostreptococcus anaerobius, Peptoniphilus asaccharolyticus, Finegoldia magna, Anaerococcus prevotii
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Serratia marcescens
- Staphylococcus aureus
- Staphylococcus epidermidis, haemolyticus, lugdunensis, saprophyticus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pyogenes (Group A Strep)
- Vibrio cholerae, parahaemolyticus, vulnificus
Viral:
- Herpes simplex virus 1
- Herpes simplex virus 2
- Varicella zoster virus (Human Herpesvirus 3, VZV)
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
Tinea
Specimen Types:
Wound Swabs (all locations)
Common Signs + Symptoms:
Scaly ring-shaped area, itchiness, scaly skin, or noninflamed dermatosis on the body or hair follicle (tinea capitis or tinea barbae)
Fungal:
- Candida albicans, glabrata, parapsilosis, tropicalis
- Epidermophyton floccosum
- Malassezia furfur, restricta, sympodialis, globosa
- Microsporum audouinii, canis; Nannizzia gypseum
- Trichophyton mentagrophytes/interdigitale, rubrum, tonsurans, violaceum
ADD-ON:
Candida auris
Urinary Tract Infection
Specimen Types:
Urine (voided), Urine (catheter), Internal Urethra
Common Signs + Symptoms:
Dysuria, hematuria, urgency of urination, frequency of micturition, or pain of micturition
Bacterial:
- Acinetobacter baumannii
- Citrobacter freundii
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Klebsiella pneumoniae, oxytoca
- Morganella morganii
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Serratia marcescens
- Staphylococcus aureus
- Staphylococcus epidermidis, haemolyticus, lugdunensis
- Staphylococcus saprophyticus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pyogenes (Group A Strep)
Fungal:
- Candida albicans, parapsilosis, tropicalis
- Candida glabrata (Nakaseomyces glabratus)
- Candida krusei (Pichia kudriavzevii)
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
Urinary Tract Infection + High Risk Sexual Behavior
Specimen Types:
Urine (voided), Urine (catheter), Internal Urethra
Common Signs + Symptoms:
Dysuria, hematuria, urgency of urination, frequency of micturition, pain of micturition, and high risk sexual behavior
Bacterial:
- Acinetobacter baumannii
- Chlamydia trachomatis
- Citrobacter freundii
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Klebsiella pneumoniae, oxytoca
- Morganella morganii
- Mycoplasma genitalium
- Mycoplasma hominis
- Neisseria gonorrhoeae
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Serratia marcescens
- Staphylococcus aureus
- Staphylococcus epidermidis, haemolyticus, lugdunensis
- Staphylococcus saprophyticus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pyogenes (Group A Strep)
- Ureaplasma urealyticum
- Ureaplasma parvum
Protozoal:
- Trichomonas vaginalis
Fungal:
- Candida albicans, parapsilosis, tropicalis
- Candida glabrata (Nakaseomyces glabratus)
- Candida krusei (Pichia kudriavzevii)
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
Urinary Tract Infection
Specimen Types:
Urine (voided), Urine (catheter), Internal Urethra
Common Signs + Symptoms:
Dysuria, hematuria, urgency of urination, frequency of micturition, or pain of micturition
Bacterial:
- Acinetobacter baumannii
- Citrobacter freundii
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Klebsiella pneumoniae, oxytoca
- Morganella morganii
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Serratia marcescens
- Staphylococcus aureus
- Staphylococcus epidermidis, haemolyticus, lugdunensis
- Staphylococcus saprophyticus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pyogenes (Group A Strep)
Fungal:
- Candida albicans, parapsilosis, tropicalis
- Candida glabrata (Nakaseomyces glabratus)
- Candida krusei (Pichia kudriavzevii)
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
Urinary Tract Infection + High Risk Sexual Behavior
Specimen Types:
Urine (voided), Urine (catheter), Internal Urethra
Common Signs + Symptoms:
Dysuria, hematuria, urgency of urination, frequency of micturition, pain of micturition, and high risk sexual behavior
Bacterial:
- Acinetobacter baumannii
- Chlamydia trachomatis
- Citrobacter freundii
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Klebsiella pneumoniae, oxytoca
- Morganella morganii
- Mycoplasma genitalium
- Mycoplasma hominis
- Neisseria gonorrhoeae
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Serratia marcescens
- Staphylococcus aureus
- Staphylococcus epidermidis, haemolyticus, lugdunensis
- Staphylococcus saprophyticus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pyogenes (Group A Strep)
- Ureaplasma urealyticum
- Ureaplasma parvum
Protozoal:
- Trichomonas vaginalis
Fungal:
- Candida albicans, parapsilosis, tropicalis
- Candida glabrata (Nakaseomyces glabratus)
- Candida krusei (Pichia kudriavzevii)
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
Onychomycosis
Specimen Types:
Nail (toe), Nail (finger)
Common Signs + Symptoms:
Skin disorder presenting with nail discoloration (yellow, white, or brown), dystrophy (deformed), thickening, onycholysis (separation from nail bed)
Bacterial:
- Pseudomonas aeruginosa
Fungal:
- Aspergillus flavus, fumigatus, niger, terreus
- Candida albicans, glabrata, parapsilosis, tropicalis
- Cutaneotrichosporon mucoides, Trichosporon asahii
- Epidermophyton floccosum
- Fusarium oxysporum, Neocosmospora solani
- Malassezia furfur, restricta, sympodialis, globosa
- Microsporum audouinii, canis; Nannizzia gypseum
- Trichophyton mentagrophytes/interdigitale, rubrum, tonsurans, violaceum
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
Onychomycosis
Specimen Types:
Nail (toe), Nail (finger)
Common Signs + Symptoms:
Skin disorder presenting with nail discoloration (yellow, white, or brown), dystrophy (deformed), thickening, onycholysis (separation from nail bed)
Bacterial:
- Pseudomonas aeruginosa
Fungal:
- Aspergillus flavus, fumigatus, niger, terreus
- Candida albicans, glabrata, parapsilosis, tropicalis
- Cutaneotrichosporon mucoides, Trichosporon asahii
- Epidermophyton floccosum
- Fusarium oxysporum, Neocosmospora solani
- Malassezia furfur, restricta, sympodialis, globosa
- Microsporum audouinii, canis; Nannizzia gypseum
- Trichophyton mentagrophytes/interdigitale, rubrum, tonsurans, violaceum
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
Diarrheal Disease
Specimen Types:
Rectal (fecal), Stool
Common Signs + Symptoms:
Community-acquired diarrhea, pt has significant fever + bloody stools, <7 days of symptoms. Concern of parasitic infection if patient has symptoms >14 days.
Bacterial:
- Campylobacter coli, jejuni, upsaliensis
- Clostridioides difficile (toxins A, B)
- Clostridium perfringens
- Enteroinvasive E. coli (EIEC) / Shigella spp.
- Salmonella
- Shiga toxin producing E. coli (STEC)
- Shiga toxin producing E. coli O157 (STEC O157)
- Vibrio cholerae, parahaemolyticus, vulnificus
- Yersinia enterocolitica
Viral:
- Norovirus (Genogroup 1, 2)
- Rotavirus A, B, C
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
ADD-ON:
(ALL PARASITES: GSTROAO) Cryptosporidium, Cyclospora cayetanensis, Dientamoeba fragilis, Entamoeba histolytica, Giardia lamblia (intestinalis), Microsporidium (Enterocytozoon bienusi, Encephalitozoon intestinalis)
Traveler's Diarrheal Disease
Specimen Types:
Rectal (fecal), Stool
Common Signs + Symptoms:
Traveler's diarrhea, pt has significant fever + bloody stools, <7 days of symptoms. Concern of parasitic infection if patient has symptoms >14 days.
Bacterial:
- Campylobacter coli, jejuni, upsaliensis
- Enteroaggregative E. coli (EAEC)
- Enteroinvasive E. coli (EIEC) / Shigella spp.
- Enteropathogenic E. coli (EPEC)
- Enterotoxigenic E. coli (ETEC)
- Salmonella
- Shiga toxin producing E. coli (STEC)
- Shiga toxin producing E. coli O157 (STEC O157)
Viral:
- Adenovirus F40/41
- Norovirus (Genogroup 1, 2)
- Rotavirus A, B, C
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
ADD-ON:
(ALL PARASITES: GSTRPAO) Cryptosporidium, Cyclospora cayetanensis, Dientamoeba fragilis, Entamoeba histolytica, Giardia lamblia (intestinalis), Microsporidium (Enterocytozoon bienusi, Encephalitozoon intestinalis)
Pediatric Diarrheal Disease
Specimen Types:
Rectal (fecal), Stool
Common Signs + Symptoms:
Community-acquired pediatric diarrhea, pt has significant fever + bloody stools, <7 days of symptoms. Concern of parasitic infection if patient has symptoms >14 days.
Bacterial:
- Campylobacter coli, jejuni, upsaliensis
- Enteroaggregative E. coli (EAEC)
- Salmonella
- Shiga toxin producing E. coli (STEC)
- Shiga toxin producing E. coli O157 (STEC O157)
- Vibrio cholerae, parahaemolyticus, vulnificus
Viral:
- Adenovirus F40/41
- Astrovirus
- Norovirus (Genogroup 1, 2)
- Rotavirus A, B, C
- Sapovirus
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
ADD-ON:
(ALL PARASITES: PEDGIAO) Cryptosporidium, Cyclospora cayetanensis, Dientamoeba fragilis, Entamoeba histolytica, Giardia lamblia (intestinalis), Microsporidium (Enterocytozoon bienusi, Encephalitozoon intestinalis)
Diarrheal Disease
Specimen Types:
Rectal (fecal), Stool
Common Signs + Symptoms:
Community-acquired diarrhea, pt has significant fever + bloody stools, <7 days of symptoms. Concern of parasitic infection if patient has symptoms >14 days.
Bacterial:
- Campylobacter coli, jejuni, upsaliensis
- Clostridioides difficile (toxins A, B)
- Clostridium perfringens
- Enteroinvasive E. coli (EIEC) / Shigella spp.
- Salmonella
- Shiga toxin producing E. coli (STEC)
- Shiga toxin producing E. coli O157 (STEC O157)
- Vibrio cholerae, parahaemolyticus, vulnificus
- Yersinia enterocolitica
Viral:
- Norovirus (Genogroup 1, 2)
- Rotavirus A, B, C
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
ADD-ON:
(ALL PARASITES: GSTROAO) Cryptosporidium, Cyclospora cayetanensis, Dientamoeba fragilis, Entamoeba histolytica, Giardia lamblia (intestinalis), Microsporidium (Enterocytozoon bienusi, Encephalitozoon intestinalis)
Traveler's Diarrheal Disease
Specimen Types:
Rectal (fecal), Stool
Common Signs + Symptoms:
Traveler's diarrhea, pt has significant fever + bloody stools, <7 days of symptoms. Concern of parasitic infection if patient has symptoms >14 days.
Bacterial:
- Campylobacter coli, jejuni, upsaliensis
- Enteroaggregative E. coli (EAEC)
- Enteroinvasive E. coli (EIEC) / Shigella spp.
- Enteropathogenic E. coli (EPEC)
- Enterotoxigenic E. coli (ETEC)
- Salmonella
- Shiga toxin producing E. coli (STEC)
- Shiga toxin producing E. coli O157 (STEC O157)
Viral:
- Adenovirus F40/41
- Norovirus (Genogroup 1, 2)
- Rotavirus A, B, C
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
ADD-ON:
(ALL PARASITES: GSTRPAO) Cryptosporidium, Cyclospora cayetanensis, Dientamoeba fragilis, Entamoeba histolytica, Giardia lamblia (intestinalis), Microsporidium (Enterocytozoon bienusi, Encephalitozoon intestinalis)
Pediatric Diarrheal Disease
Specimen Types:
Rectal (fecal), Stool
Common Signs + Symptoms:
Community-acquired pediatric diarrhea, pt has significant fever + bloody stools, <7 days of symptoms. Concern of parasitic infection if patient has symptoms >14 days.
Bacterial:
- Campylobacter coli, jejuni, upsaliensis
- Enteroaggregative E. coli (EAEC)
- Salmonella
- Shiga toxin producing E. coli (STEC)
- Shiga toxin producing E. coli O157 (STEC O157)
- Vibrio cholerae, parahaemolyticus, vulnificus
Viral:
- Adenovirus F40/41
- Astrovirus
- Norovirus (Genogroup 1, 2)
- Rotavirus A, B, C
- Sapovirus
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
ADD-ON:
(ALL PARASITES: PEDGIAO) Cryptosporidium, Cyclospora cayetanensis, Dientamoeba fragilis, Entamoeba histolytica, Giardia lamblia (intestinalis), Microsporidium (Enterocytozoon bienusi, Encephalitozoon intestinalis)
Urethritis / Discharge
Specimen Types:
Urine (voided), Internal Urethra
Common Signs + Symptoms:
Pain with urination, itching, burning, and discharge
Bacterial:
- Chlamydia trachomatis
- Mycoplasma genitalium
- Mycoplasma hominis
- Neisseria gonorrhoeae
- Ureaplasma urealyticum
- Ureaplasma parvum
Viral:
- Herpes simplex virus 1
- Herpes simplex virus 2
Protozoal:
- Trichomonas vaginalis
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
Vaginitis
Specimen Types:
Vaginal, Cervical/Endometrial, Vulva/Labia/Vestibule/Perineal, Urine (voided)
Common Signs + Symptoms:
Vaginal discharge, odor, itching, irritation, bacterial vaginosis, vulvovaginal candidiasis
Bacterial:
- Atopobium vaginae
- BVAB2, 3 (Bacterial vaginosis-associated bacteria 2, 3); Mobiluncus spp.
- Chlamydia trachomatis
- Gardnerella vaginalis
- Megasphaera (types 1, 2)
- Neisseria gonorrhoeae
Viral:
- Herpes simplex virus 1
- Herpes simplex virus 2
Protozoal:
- Trichomonas vaginalis
Fungal:
- Candida albicans, parapsilosis, tropicalis
- Candida glabrata (Nakaseomyces glabratus)
- Candida krusei (Pichia kudriavzevii)
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
Recurrent Vaginitis
Specimen Types:
Vaginal, Cervical/Endometrial, Vulva/Labia/Vestibule/Perineal, Urine (voided)
Common Signs + Symptoms:
Pain with urination, burning, urethral discharge, vaginal discharge, odor, itching, irritation, or recurrent vaginitis
Bacterial:
- Atopobium vaginae
- BVAB2, 3 (Bacterial vaginosis-associated bacteria 2, 3); Mobiluncus spp.
- Chlamydia trachomatis
- Gardnerella vaginalis
- Megasphaera (types 1, 2)
- Mycoplasma genitalium
- Mycoplasma hominis
- Neisseria gonorrhoeae
- Ureaplasma urealyticum
- Ureaplasma parvum
Viral:
- Herpes simplex virus 1
- Herpes simplex virus 2
Protozoal:
- Trichomonas vaginalis
Fungal:
- Candida albicans, parapsilosis, tropicalis
- Candida glabrata (Nakaseomyces glabratus)
- Candida krusei (Pichia kudriavzevii)
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
Genital Lesion
Specimen Types:
Genital Ulcer/Lesion, Vaginal, Cervical/Endometrial, Rectal/Anal/Peri-Anal, Oropharynx/Throat/Oral, Ulcer/lesion
Common Signs + Symptoms:
Genital ulcer or lesion
Bacterial:
- Chlamydia trachomatis
- Haemophilus ducreyi
- Treponema pallidum (Syphilis)
Viral:
- Herpes simplex virus 1
- Herpes simplex virus 2
- Mpox (Monkeypox)
- Varicella zoster virus (Human Herpesvirus 3, VZV)
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
Pelvic Inflammatory Disease
Specimen Types:
Vaginal, Cervical/Endometrial
Common Signs + Symptoms:
Lower abdominal pain, abnormal vaginal bleeding, urinary frequency, and vaginal discharge
Bacterial:
- Actinomyces israelii
- Chlamydia trachomatis
- Mycoplasma genitalium
- Mycoplasma hominis
- Neisseria gonorrhoeae
- Treponema pallidum (Syphilis)
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
Proctitis
Specimen Types:
Rectal/Anal
Common Signs + Symptoms:
Rectal pain, rectal bleeding, and purulent rectal discharge
Bacterial:
- Chlamydia trachomatis
- Neisseria gonorrhoeae
- Treponema pallidum (Syphilis)
Viral:
- Herpes simplex virus 1
- Herpes simplex virus 2
- Mpox (Monkeypox)
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
Complicated Genitourinary Infection
Specimen Types:
Urine (voided), Urine (catheter), Internal Urethra, Vaginal, Cervical/Endometrial, Vulva/Labia/Vestibule/Perineal, Rectal/Anal, Penile Meatus, Genital Skin, Oropharynx/Throat/Oral
Common Signs + Symptoms:
Dysuria, hematuria, urgency of urination, frequency of micturition, fever, abdominal pain, and aerobic vaginitis
Bacterial:
- Acinetobacter baumannii
- Atopobium vaginae
- BVAB2, 3 (Bacterial vaginosis-associated bacteria 2, 3); Mobiluncus spp.
- Chlamydia trachomatis
- Citrobacter freundii
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Gardnerella vaginalis
- Klebsiella pneumoniae, oxytoca
- Megasphaera (types 1, 2)
- Mycoplasma genitalium
- Mycoplasma hominis
- Morganella morganii
- Neisseria gonorrhoeae
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Serratia marcescens
- Staphylococcus aureus
- Staphylococcus epidermidis, haemolyticus, lugdunensis
- Staphylococcus saprophyticus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pyogenes (Group A Strep)
- Ureaplasma parvum
- Ureaplasma urealyticum
Protozoal:
- Trichomonas vaginalis
Fungal:
- Candida albicans, parapsilosis, tropicalis
- Candida glabrata (Nakaseomyces glabratus)
- Candida krusei (Pichia kudriavzevii)
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
CGT (Asymptomatic)
Specimen Types:
Urine (voided), Urine (catheter), Internal Urethra, Vaginal, Cervical/Endometrial, Vulva/Labia/Vestibule/Perineal, Rectal/Anal, Penile Meatus, Genital skin, Oropharynx/Throat/Oral
Common Signs + Symptoms:
High risk heterosexual behavior, high risk homosexual behavior, or suspected exposure to a sexually transmitted infection
Bacterial:
- Chlamydia trachomatis
- Neisseria gonorrhoeae
Protozoal:
- Trichomonas vaginalis
Urethritis / Discharge
Specimen Types:
Urine (voided), Internal Urethra
Common Signs + Symptoms:
Pain with urination, itching, burning, and discharge
Bacterial:
- Chlamydia trachomatis
- Mycoplasma genitalium
- Mycoplasma hominis
- Neisseria gonorrhoeae
- Ureaplasma urealyticum
- Ureaplasma parvum
Viral:
- Herpes simplex virus 1
- Herpes simplex virus 2
Protozoal:
- Trichomonas vaginalis
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
Vaginitis
Specimen Types:
Vaginal, Cervical/Endometrial, Vulva/Labia/Vestibule/Perineal, Urine (voided)
Common Signs + Symptoms:
Vaginal discharge, odor, itching, irritation, bacterial vaginosis, vulvovaginal candidiasis
Bacterial:
- Atopobium vaginae
- BVAB2, 3 (Bacterial vaginosis-associated bacteria 2, 3); Mobiluncus spp.
- Chlamydia trachomatis
- Gardnerella vaginalis
- Megasphaera (types 1, 2)
- Neisseria gonorrhoeae
Viral:
- Herpes simplex virus 1
- Herpes simplex virus 2
Protozoal:
- Trichomonas vaginalis
Fungal:
- Candida albicans, parapsilosis, tropicalis
- Candida glabrata (Nakaseomyces glabratus)
- Candida krusei (Pichia kudriavzevii)
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
Recurrent Vaginitis
Specimen Types:
Vaginal, Cervical/Endometrial, Vulva/Labia/Vestibule/Perineal, Urine (voided)
Common Signs + Symptoms:
Pain with urination, burning, urethral discharge, vaginal discharge, odor, itching, irritation, or recurrent vaginitis
Bacterial:
- Atopobium vaginae
- BVAB2, 3 (Bacterial vaginosis-associated bacteria 2, 3); Mobiluncus spp.
- Chlamydia trachomatis
- Gardnerella vaginalis
- Megasphaera (types 1, 2)
- Mycoplasma genitalium
- Mycoplasma hominis
- Neisseria gonorrhoeae
- Ureaplasma urealyticum
- Ureaplasma parvum
Viral:
- Herpes simplex virus 1
- Herpes simplex virus 2
Protozoal:
- Trichomonas vaginalis
Fungal:
- Candida albicans, parapsilosis, tropicalis
- Candida glabrata (Nakaseomyces glabratus)
- Candida krusei (Pichia kudriavzevii)
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
Genital Lesion
Specimen Types:
Genital Ulcer/Lesion, Vaginal, Cervical/Endometrial, Rectal/Anal/Peri-Anal, Oropharynx/Throat/Oral, Ulcer/lesion
Common Signs + Symptoms:
Genital ulcer or lesion
Bacterial:
- Chlamydia trachomatis
- Haemophilus ducreyi
- Treponema pallidum (Syphilis)
Viral:
- Herpes simplex virus 1
- Herpes simplex virus 2
- Mpox (Monkeypox)
- Varicella zoster virus (Human Herpesvirus 3, VZV)
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
Pelvic Inflammatory Disease
Specimen Types:
Vaginal, Cervical/Endometrial
Common Signs + Symptoms:
Lower abdominal pain, abnormal vaginal bleeding, urinary frequency, and vaginal discharge
Bacterial:
- Actinomyces israelii
- Chlamydia trachomatis
- Mycoplasma genitalium
- Mycoplasma hominis
- Neisseria gonorrhoeae
- Treponema pallidum (Syphilis)
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
Proctitis
Specimen Types:
Rectal/Anal
Common Signs + Symptoms:
Rectal pain, rectal bleeding, and purulent rectal discharge
Bacterial:
- Chlamydia trachomatis
- Neisseria gonorrhoeae
- Treponema pallidum (Syphilis)
Viral:
- Herpes simplex virus 1
- Herpes simplex virus 2
- Mpox (Monkeypox)
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
Complicated Genitourinary Infection
Specimen Types:
Urine (voided), Urine (catheter), Internal Urethra, Vaginal, Cervical/Endometrial, Vulva/Labia/Vestibule/Perineal, Rectal/Anal, Penile Meatus, Genital Skin, Oropharynx/Throat/Oral
Common Signs + Symptoms:
Dysuria, hematuria, urgency of urination, frequency of micturition, fever, abdominal pain, and aerobic vaginitis
Bacterial:
- Acinetobacter baumannii
- Atopobium vaginae
- BVAB2, 3 (Bacterial vaginosis-associated bacteria 2, 3); Mobiluncus spp.
- Chlamydia trachomatis
- Citrobacter freundii
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Gardnerella vaginalis
- Klebsiella pneumoniae, oxytoca
- Megasphaera (types 1, 2)
- Mycoplasma genitalium
- Mycoplasma hominis
- Morganella morganii
- Neisseria gonorrhoeae
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Serratia marcescens
- Staphylococcus aureus
- Staphylococcus epidermidis, haemolyticus, lugdunensis
- Staphylococcus saprophyticus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pyogenes (Group A Strep)
- Ureaplasma parvum
- Ureaplasma urealyticum
Protozoal:
- Trichomonas vaginalis
Fungal:
- Candida albicans, parapsilosis, tropicalis
- Candida glabrata (Nakaseomyces glabratus)
- Candida krusei (Pichia kudriavzevii)
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
CGT (Asymptomatic)
Specimen Types:
Urine (voided), Urine (catheter), Internal Urethra, Vaginal, Cervical/Endometrial, Vulva/Labia/Vestibule/Perineal, Rectal/Anal, Penile Meatus, Genital skin, Oropharynx/Throat/Oral
Common Signs + Symptoms:
High risk heterosexual behavior, high risk homosexual behavior, or suspected exposure to a sexually transmitted infection
Bacterial:
- Chlamydia trachomatis
- Neisseria gonorrhoeae
Protozoal:
- Trichomonas vaginalis