HealthTrackRx PCR Testing
HealthTrackRx is the nation’s premier infectious disease laboratory, specializing in RT-PCR (Real-Time Reverse Transcription Polymerase Chain Reaction), (which is) one of the foremost methods of detecting bacteria or viruses on the molecular level. RT-PCR delivers higher degrees of accuracy and considerably faster results than culture, which can take 3-14 days or longer for results. This greatly delays the time necessary for an accurate diagnosis and in many cases, result delays can mean the difference between life and death.
Our PCR Assay
HealthTrackRx’s pathogen assay incorporates the latest in RT-PCR technology to analyze your patient’s sample rapidly and reliably. We utilize both Thermo Fisher and Hamilton technology, providing results with the highest specificity and sensitivity in the market. Our assay accurately detects and differentiates ~99% 1 of the most relevant viral, bacterial, and fungal pathogens.
Learn more about how and when to use each test, and the pathogens our tests cover.
Our Menus
Respiratory Infections
PANEL DESCRIPTION: Consider if patient presents with symptoms of an upper respiratory tract infection, including cough, moderate temperature elevation, and mucopurulent sputum.
BACTERIA
Bordetella pertussis, parapertussis, bronchiseptica
Chlamydia pneumoniae
Haemophilus influenzae
Moraxella catarrhalis
Mycoplasma pneumoniae
Streptococcus pneumoniae
Bordetella pertussis, parapertussis, bronchiseptica
Chlamydia pneumoniae
Haemophilus influenzae
Moraxella catarrhalis
Mycoplasma pneumoniae
Streptococcus pneumoniae
VIRUS
Adenovirus HAdV-B
COVID-19 Coronavirus (SARS-CoV-2)
Enterovirus D68
Human metapneumovirus
Influenza virus A, B
Coronaviruses (229E, NL63, HKU1, OC43)
Parainfluenza virus (types 1, 2, 3, 4)
Respiratory syncytial virus
Rhinovirus/Enterovirus
Adenovirus HAdV-B
COVID-19 Coronavirus (SARS-CoV-2)
Enterovirus D68
Human metapneumovirus
Influenza virus A, B
Coronaviruses (229E, NL63, HKU1, OC43)
Parainfluenza virus (types 1, 2, 3, 4)
Respiratory syncytial virus
Rhinovirus/Enterovirus
RESISTANCE
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
SWAB SITES: Nasopharyngeal/Nares, Oropharynx/Throat/Oral, Cough Sputum
ADD-ON: Epstein-Barr Virus (Human Herpesvirus 4)
PANEL DESCRIPTION: Consider if patient presents with an acute upper respiratory tract infection, high grade fever, acute cough, runny nose, pain in throat, wheezing, nasal congestion, shortness of breath, malaise.
COVID-19 Coronavirus (SARS-CoV-2)
Influenza virus A, B
Respiratory syncytial virus
SWAB SITES: Nasopharyngeal/Nares, Oropharynx/Throat/Oral, Cough Sputum
PANEL DESCRIPTION: Consider for pediatric or complex immunocompromised patient with concern of communicable virus or meningitis, presenting with an Acute Upper Respiratory Tract Infection.
Adenovirus HAdV-B
Coronavirus (229E, NL63, OC43, and HKU1)
COVID-19 Coronavirus (SARS-CoV-2)
Coronavirus (229E, NL63, OC43, and HKU1)
COVID-19 Coronavirus (SARS-CoV-2)
Enterovirus D68
Human metapneumovirus
Influenza virus A, B
Human metapneumovirus
Influenza virus A, B
Parainfluenza virus (types 1, 2, 3, 4)
Respiratory syncytial virus
Rhinovirus/Enterovirus
Respiratory syncytial virus
Rhinovirus/Enterovirus
SWAB SITES: Nasopharyngeal/Nares, Oropharynx/Throat/Oral, Cough Sputum
PANEL DESCRIPTION: Consider if patient presents with Acute Otitis Media Ear pain, decreased or muffled hearing & bulging eardrum, drainage from ear. Or if patient presents with Mastoiditis or redness or swelling behind ear lobe, fever, ear pain, headache, hearing loss.
BACTERIA
Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
Haemophilus influenzae
Klebsiella pneumoniae, oxytoca
Moraxella catarrhalis
Mycoplasma pneumoniae
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Staphylococcus aureus
Streptococcus pneumoniae
Streptococcus pyogenes (Group A Strep)
Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
Haemophilus influenzae
Klebsiella pneumoniae, oxytoca
Moraxella catarrhalis
Mycoplasma pneumoniae
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Staphylococcus aureus
Streptococcus pneumoniae
Streptococcus pyogenes (Group A Strep)
VIRUS
Adenovirus HAdV-B
COVID-19 Coronavirus (SARS-CoV-2)
Enterovirus D68
Human metapneumovirus
Influenza virus A, B
Coronaviruses (229E, NL63, HKU1, OC43)
Parainfluenza virus (types 1, 2, 3, 4)
Respiratory syncytial virus
Rhinovirus/Enterovirus
Adenovirus HAdV-B
COVID-19 Coronavirus (SARS-CoV-2)
Enterovirus D68
Human metapneumovirus
Influenza virus A, B
Coronaviruses (229E, NL63, HKU1, OC43)
Parainfluenza virus (types 1, 2, 3, 4)
Respiratory syncytial virus
Rhinovirus/Enterovirus
RESISTANCE
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
SWAB SITES: Nasopharyngeal/Nares, Ear
PANEL DESCRIPTION: Consider if patient presents with pain in throat, fever, pharyngeal edema, patchy tonsillar exudates, tender/swollen anterior cervical lymph nodes.
BACTERIA
Streptococcus pyogenes (Group A Strep)
Chlamydia pneumoniae
Mycoplasma pneumoniae
Streptococcus pyogenes (Group A Strep)
Chlamydia pneumoniae
Mycoplasma pneumoniae
VIRUS
Adenovirus HAdV-B
COVID-19 Coronavirus (SARS-CoV-2)
Enterovirus D68
Human metapneumovirus
Influenza virus A, B
Coronaviruses (229E, NL63, HKU1, OC43)
Parainfluenza virus (types 1, 2, 3, 4)
Respiratory syncytial virus
Rhinovirus/Enterovirus
Adenovirus HAdV-B
COVID-19 Coronavirus (SARS-CoV-2)
Enterovirus D68
Human metapneumovirus
Influenza virus A, B
Coronaviruses (229E, NL63, HKU1, OC43)
Parainfluenza virus (types 1, 2, 3, 4)
Respiratory syncytial virus
Rhinovirus/Enterovirus
RESISTANCE
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
ADD-ON: Chlamydia trachomatis, Epstein-Barr Virus (Human Herpesvirus 4), Neisseria gonorrhoeae
SWAB SITES: Oropharynx/Throat/Oral
PANEL DESCRIPTION: Consider if patient presents with upper respiratory tract infection, high grade fever, dyspnea, cough, sputum production, hypoxia & chest X-ray opacity.
BACTERIA
Acinetobacter baumannii
Bordetella pertussis, parapertussis, bronchiseptica
Chlamydia pneumoniae
Enterobacter cloacae complex,
Klebsiella (Enterobacter) aerogenes
Escherichia coli
Haemophilus influenzae
Klebsiella pneumoniae, oxytoca
Legionella pneumophila
Moraxella catarrhalis
Mycoplasma pneumoniae
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Serratia marcescens
Staphylococcus aureus
Streptococcus agalactiae (Group B Strep)
Streptococcus pneumoniae
Streptococcus pyogenes (Group A Strep)
Acinetobacter baumannii
Bordetella pertussis, parapertussis, bronchiseptica
Chlamydia pneumoniae
Enterobacter cloacae complex,
Klebsiella (Enterobacter) aerogenes
Escherichia coli
Haemophilus influenzae
Klebsiella pneumoniae, oxytoca
Legionella pneumophila
Moraxella catarrhalis
Mycoplasma pneumoniae
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Serratia marcescens
Staphylococcus aureus
Streptococcus agalactiae (Group B Strep)
Streptococcus pneumoniae
Streptococcus pyogenes (Group A Strep)
VIRUS
Adenovirus HAdV-B
COVID-19 Coronavirus (SARS-CoV-2)
Enterovirus D68
Human metapneumovirus
Influenza virus A
Influenza virus B
Coronaviruses (229E, NL63, HKU1, OC43)
Parainfluenza virus (types 1, 2, 3, 4)
Respiratory syncytial virus
Rhinovirus/Enterovirus
Adenovirus HAdV-B
COVID-19 Coronavirus (SARS-CoV-2)
Enterovirus D68
Human metapneumovirus
Influenza virus A
Influenza virus B
Coronaviruses (229E, NL63, HKU1, OC43)
Parainfluenza virus (types 1, 2, 3, 4)
Respiratory syncytial virus
Rhinovirus/Enterovirus
RESISTANCE
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
ADD-ON: Chlamydia trachomatis, Mycobacterium tuberculosis, Neisseria gonorrhoeae
SWAB SITES: Nasopharyngeal/Nares, Oropharynx/Throat/Oral, Cough Sputum
Urinary Tract Infections
PANEL DESCRIPTION: Consider if patient presents with dysuria, hematuria, urgency of urination, frequency of micturition, bacteriuria, or pain of micturition.
Acinetobacter baumannii
Citrobacter freundii
Enterobacter cloacae complex,
Klebsiella (Enterobacter) aerogenes
Enterococcus faecalis, faecium
Escherichia coli
Klebsiella pneumoniae, oxytoca
Morganella morganii
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Serratia marcescens
Staphylococcus aureus
Staphylococcus epidermidis, haemolyticus,
lugdunensis, saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pyogenes (Group A Strep)
Citrobacter freundii
Enterobacter cloacae complex,
Klebsiella (Enterobacter) aerogenes
Enterococcus faecalis, faecium
Escherichia coli
Klebsiella pneumoniae, oxytoca
Morganella morganii
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Serratia marcescens
Staphylococcus aureus
Staphylococcus epidermidis, haemolyticus,
lugdunensis, saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pyogenes (Group A Strep)
FUNGI
Candida albicans, parapsilosis, tropicalis
Candida glabrata
Candida krusei
Candida albicans, parapsilosis, tropicalis
Candida glabrata
Candida krusei
RESISTANCE
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
SWAB SITES: Urine (voided), Urine (catheter), Urethral Swab
PANEL DESCRIPTION: Consider if patient presents with dysuria, hematuria, urgency of urination, frequency of micturition, bacteriuria, pain of micturition, and high risk sexual behavior.
Acinetobacter baumannii
Chlamydia trachomatis
Citrobacter freundii
Enterobacter cloacae complex,
Klebsiella (Enterobacter) aerogenes
Enterococcus faecalis, faecium
Escherichia coli
Klebsiella pneumoniae, oxytoca
Morganella morganii
Mycoplasma genitalium, hominis
Neisseria gonorrhoeae
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Serratia marcescens
Staphylococcus aureus
Staphylococcus epidermidis, haemolyticus,
lugdunensis, saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pyogenes (Group A Strep)
Trichomonas vaginalis
Ureaplasma urealyticum, parvum
Chlamydia trachomatis
Citrobacter freundii
Enterobacter cloacae complex,
Klebsiella (Enterobacter) aerogenes
Enterococcus faecalis, faecium
Escherichia coli
Klebsiella pneumoniae, oxytoca
Morganella morganii
Mycoplasma genitalium, hominis
Neisseria gonorrhoeae
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Serratia marcescens
Staphylococcus aureus
Staphylococcus epidermidis, haemolyticus,
lugdunensis, saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pyogenes (Group A Strep)
Trichomonas vaginalis
Ureaplasma urealyticum, parvum
FUNGI
Candida albicans, parapsilosis, tropicalis
Candida glabrata
Candida krusei
Candida albicans, parapsilosis, tropicalis
Candida glabrata
Candida krusei
RESISTANCE
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
SWAB SITES: Urine (voided), Urine (catheter), Urethral Swab
Genitourinary Infections
PANEL DESCRIPTION: Consider if patient presents with dysuria, hematuria, urgency of urination, frequency of micturition, fever, abdominal pain.
Acinetobacter baumannii
Atopobium vaginae
BVAB2,3 (Bacterial vaginosis associated
bacteria 2,3); Mobiluncus spp
Citrobacter freundii
Chlamydia trachomatis
Enterobacter cloacae complex,
Klebsiella (Enterobacter) aerogenes
Enterococcus faecalis, faecium
Escherichia coli
Gardnerella vaginalis
Klebsiella pneumoniae, oxytoca
Megasphaera (types 1, 2)
Morganella morganii
Mycoplasma genitalium, hominis
Neisseria gonorrhoeae
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Serratia marcescens
Staphylococcus aureus
Staphylococcus epidermidis, haemolyticus,
lugdunensis, saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pyogenes (Group A Strep)
Trichomonas vaginalis
Ureaplasma urealyticum, parvum
Atopobium vaginae
BVAB2,3 (Bacterial vaginosis associated
bacteria 2,3); Mobiluncus spp
Citrobacter freundii
Chlamydia trachomatis
Enterobacter cloacae complex,
Klebsiella (Enterobacter) aerogenes
Enterococcus faecalis, faecium
Escherichia coli
Gardnerella vaginalis
Klebsiella pneumoniae, oxytoca
Megasphaera (types 1, 2)
Morganella morganii
Mycoplasma genitalium, hominis
Neisseria gonorrhoeae
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Serratia marcescens
Staphylococcus aureus
Staphylococcus epidermidis, haemolyticus,
lugdunensis, saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pyogenes (Group A Strep)
Trichomonas vaginalis
Ureaplasma urealyticum, parvum
FUNGI
Candida albicans, parapsilosis, tropicalis
Candida glabrata
Candida krusei
RESISTANCE
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
ADD-ON
GENITAL LESION
Haemophilus ducreyi (Chancroid)
Treponema pallidum (Syphilis)
Herpes simplex virus 1
Herpes simplex virus 2
Mpox (Monkeypox)
GENITAL LESION
Haemophilus ducreyi (Chancroid)
Treponema pallidum (Syphilis)
Herpes simplex virus 1
Herpes simplex virus 2
Mpox (Monkeypox)
ADD-ON: High Risk HPV types 16, 39, 26, 18, 51, 53, 31, 52, 66, 33, 58, 73, 35, 59, 82, 45, 56, 68, 67, 69, 70
SWAB SITES: Urine (voided), Urine (catheter), Urethral swab, Cervical/Vaginal/Cervicovaginal/Endometrial, Vulva/Labia/Vestibule/Perineal, Rectal/Anal/Peri-Anal, Oropharynx/Throat/Oral, Penile (glans, corpus, prepuceal, etc), Prostatic/Seminal Fluid, Genital skin (Perineal, peri-vestibular, scrotal, peri-anal, inguinal)
REQUIRED SWAB SITES IF GENITAL LESION ADDED: Cervical/Vaginal/Cervicovaginal/Endometrial, Genital ulcer/lesion, Rectal/Anal/Peri-Anal, Oral cavity/Oropharynx/Throat
PANEL DESCRIPTION: Consider if patient has pain with urination, pruritus, burning, and discharge.
Chlamydia trachomatis
Mycoplasma genitalium, hominis
Neisseria gonorrhoeae
Trichomonas vaginalis
Ureaplasma urealyticum, parvum
Mycoplasma genitalium, hominis
Neisseria gonorrhoeae
Trichomonas vaginalis
Ureaplasma urealyticum, parvum
VIRUS
Herpes simplex virus 1
Herpes simplex virus 2
Herpes simplex virus 1
Herpes simplex virus 2
RESISTANCE
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
SWAB SITES: Urine (voided), Urethral swab
PANEL DESCRIPTION: Consider if patient presents with vaginal discharge, odor, itching, and/or discomfort, Bacterial Vaginosis, VulvoVaginal Candidiasis.
Atopobium vaginae
BVAB2,3 (Bacterial vaginosis associated
bacteria 2,3); Mobiluncus spp
Candida albicans, parapsilosis, tropicalis
Candida glabrata
Candida krusei
Chlamydia trachomatis
BVAB2,3 (Bacterial vaginosis associated
bacteria 2,3); Mobiluncus spp
Candida albicans, parapsilosis, tropicalis
Candida glabrata
Candida krusei
Chlamydia trachomatis
Gardnerella vaginalis
Herpes simplex virus 1
Herpes simplex virus 2
Megasphaera (types 1, 2)
Neisseria gonorrhoeae
Trichomonas vaginalis
Herpes simplex virus 1
Herpes simplex virus 2
Megasphaera (types 1, 2)
Neisseria gonorrhoeae
Trichomonas vaginalis
RESISTANCE
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
ADD-ON: High Risk HPV types 16, 39, 26, 18, 51, 53, 31, 52, 66, 33, 58, 73, 35, 59, 82, 45, 56, 68, 67, 69, 70
SWAB SITES: Cervical/Vaginal/Cervicovaginal/Endometrial, Vulva/Labia/Vestibule/Perineal/Urine (voided)
PANEL DESCRIPTION: Consider if patient has pain with urination, pruritus, burning, urethra discharge, vaginal discharge, odor, itching, and/or discomfort.
Atopobium vaginae
BVAB2,3 (Bacterial vaginosis associated
bacteria 2,3); Mobiluncus spp
Candida albicans, parapsilosis, tropicalis
Candida glabrata
Candida krusei
Chlamydia trachomatis
BVAB2,3 (Bacterial vaginosis associated
bacteria 2,3); Mobiluncus spp
Candida albicans, parapsilosis, tropicalis
Candida glabrata
Candida krusei
Chlamydia trachomatis
Gardnerella vaginalis
Herpes simplex virus 1
Herpes simplex virus 2
Megasphaera (types 1, 2)
Mycoplasma genitalium, hominis
Neisseria gonorrhoeae
Trichomonas vaginalis
Ureaplasma urealyticum, parvum
Herpes simplex virus 1
Herpes simplex virus 2
Megasphaera (types 1, 2)
Mycoplasma genitalium, hominis
Neisseria gonorrhoeae
Trichomonas vaginalis
Ureaplasma urealyticum, parvum
RESISTANCE
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
SWAB SITES: Cervical/Vaginal/Cervicovaginal/Endometrial, Urine (voided), Vulva/Labia/Vestibule/Perineal
PANEL DESCRIPTION: Consider if patient presents with genital ulcer.
BACTERIA
Chlamydia trachomatis
Haemophilus ducreyi (Chancroid)
Treponema pallidum (Syphilis)
Chlamydia trachomatis
Haemophilus ducreyi (Chancroid)
Treponema pallidum (Syphilis)
VIRUS
Herpes simplex virus 1
Herpes simplex virus 2
Mpox (Monkeypox)
Herpes simplex virus 1
Herpes simplex virus 2
Mpox (Monkeypox)
RESISTANCE
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
SWAB SITES: Genital ulcer/lesion, Cervical/Vaginal/Cervicovaginal/Endometrial, Rectal/Anal/Peri-Anal, Oropharynx/Throat/Oral
PANEL DESCRIPTION: Consider if patient presents with lower abdominal pain, abnormal vaginal bleeding, urinary frequency, vaginal discharge.
Actinomyces israelii
Chlamydia trachomatis
Mycoplasma genitalium, hominis
Chlamydia trachomatis
Mycoplasma genitalium, hominis
Neisseria gonorrhoeae
Treponema pallidum (Syphilis)
Treponema pallidum (Syphilis)
RESISTANCE
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
SWAB SITES: Cervical/Vaginal/Cervicovaginal/Endometrial
PANEL DESCRIPTION: Consider if patient presents with rectal pain, bleeding, and/or bloody or purulent rectal discharge.
BACTERIA
Chlamydia trachomatis
Neisseria gonorrhoeae
Treponema pallidum (Syphilis)
Chlamydia trachomatis
Neisseria gonorrhoeae
Treponema pallidum (Syphilis)
VIRUS
Herpes simplex virus 1
Herpes simplex virus 2
Mpox (Monkeypox)
Herpes simplex virus 1
Herpes simplex virus 2
Mpox (Monkeypox)
RESISTANCE
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
tet B, tet M
SWAB SITES: Rectal/Anal/Peri-anal
PANEL DESCRIPTION: Consider if patient has high risk heterosexual behavior, high risk homosexual behavior, or suspected exposure to a sexually transmitted infection.
Chlamydia trachomatis
Neisseria gonorrhoeae
Treponema pallidum (Syphilis)
SWAB SITES: Urine (voided), Urine (catheter), Urine (urethral), Cervical/Vaginal/Cervicovaginal/Endometrial, Vulva/Labia/Vestibule/Perineal, Rectal/Anal/Peri-Anal, Oropharynx/Throat/Oral, Penile (glans, corpus, prepuceal, etc), Prostatic/Seminal Fluid, Genital skin (Perineal, peri-vestibular, scrotal, peri-anal, inguinal)
Gastrointestinal Infections
PANEL DESCRIPTION: Consider if patient presents with acute diarrhea, +/- nausea, vomiting, fever, or abdominal pain that lasts < 14 days.
BACTERIA
Campylobacter jejuni, coli
Clostridium difficile (toxins A,B)
Enteroaggregative E coli (EAEC)
Enteroinvase E coli (EIEC)/Shigella spp
Enteropathogenic E. coli (EPEC)
Enterotoxigenic E coli (ETEC)
Listeria monocytogenes
Salmonella enterica
Shiga toxin producing E coli (STEC)
Shiga toxin producing E coli O157 (STEC O157)
Vibrio cholerae, parahaemolyticus, vulnificus
Yersinia enterocolitica
Campylobacter jejuni, coli
Clostridium difficile (toxins A,B)
Enteroaggregative E coli (EAEC)
Enteroinvase E coli (EIEC)/Shigella spp
Enteropathogenic E. coli (EPEC)
Enterotoxigenic E coli (ETEC)
Listeria monocytogenes
Salmonella enterica
Shiga toxin producing E coli (STEC)
Shiga toxin producing E coli O157 (STEC O157)
Vibrio cholerae, parahaemolyticus, vulnificus
Yersinia enterocolitica
VIRUS
Adenovirus HAdV-F, HAdV-G
Astrovirus, Sapovirus G1, G2
Norovirus (Genogroup 1, 2)
Rotavirus A, B
Adenovirus HAdV-F, HAdV-G
Astrovirus, Sapovirus G1, G2
Norovirus (Genogroup 1, 2)
Rotavirus A, B
RESISTANCE
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
ADD-ON: Candida albicans, parapsilosis, tropicalis, glabrata, krusei, Chlamydia trachomatis, Neisseria gonorrhoeae, Trichomonas vaginalis
SWAB SITES: Rectal (fecal), Stool
PANEL DESCRIPTION: Consider if patient presents with acute diarrhea, +/- nausea, vomiting, fever, or abdominal pain < 14 days.
BACTERIA
Campylobacter jejuni, coli
Clostridium difficile (toxins A,B)
Enteroaggregative E coli (EAEC)
Enteroinvase E coli (EIEC)/Shigella spp
Enteropathogenic E. coli (EPEC)
Enterotoxigenic E coli (ETEC)
Listeria monocytogenes
Salmonella enterica
Shiga toxin producing E coli (STEC)
Shiga toxin producing E coli O157 (STEC O157)
Vibrio cholerae, parahaemolyticus, vulnificus
Yersinia enterocolitica
Campylobacter jejuni, coli
Clostridium difficile (toxins A,B)
Enteroaggregative E coli (EAEC)
Enteroinvase E coli (EIEC)/Shigella spp
Enteropathogenic E. coli (EPEC)
Enterotoxigenic E coli (ETEC)
Listeria monocytogenes
Salmonella enterica
Shiga toxin producing E coli (STEC)
Shiga toxin producing E coli O157 (STEC O157)
Vibrio cholerae, parahaemolyticus, vulnificus
Yersinia enterocolitica
VIRUS
Adenovirus HAdV-F, HAdV-G
Astrovirus, Sapovirus G1, G2
Norovirus (Genogroup 1, 2)
Rotavirus A, B
PARASITES
Cryptosporidium spp (parvum, hominis, felis)
Cyclospora cayetanensis, Cytoisospora belli
Dientamoeba fragilis, Entamoeba histolytica
Giardia lamblia (intestinalis)
Microsporidium (Enterocytozoon bieneusi,
Encephalitozoon intestinalis)
Cryptosporidium spp (parvum, hominis, felis)
Cyclospora cayetanensis, Cytoisospora belli
Dientamoeba fragilis, Entamoeba histolytica
Giardia lamblia (intestinalis)
Microsporidium (Enterocytozoon bieneusi,
Encephalitozoon intestinalis)
RESISTANCE
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
ADD-ON: Candida albicans, parapsilosis, tropicalis, glabrata, krusei, Chlamydia trachomatis, Neisseria gonorrhoeae, Trichomonas vaginalis
SWAB SITES: Rectal (fecal), Stool
Wound Infections
PANEL DESCRIPTION: Patient presents with a recent wound resulting from penetrating trauma or an animal or human bite with erythema, edema, heat, purulent exudate and/or pain.
Acinetobacter baumannii
Bacteroides fragilis, vulgatus
Citrobacter freundii
Clostridium perfringens, novyi, septicum
Enterobacter cloacae complex,
Klebsiella (Enterobacter) aerogenes
Escherichia coli
Klebsiella pneumoniae, oxytoca
Bacteroides fragilis, vulgatus
Citrobacter freundii
Clostridium perfringens, novyi, septicum
Enterobacter cloacae complex,
Klebsiella (Enterobacter) aerogenes
Escherichia coli
Klebsiella pneumoniae, oxytoca
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Salmonella enterica
Serratia marcescens
Staphylococcus aureus
Streptococcus agalactiae (Group B Strep)
Streptococcus pyogenes (Group A Strep)
Vibrio cholerae, parahaemolyticus, vulnificus
Pseudomonas aeruginosa
Salmonella enterica
Serratia marcescens
Staphylococcus aureus
Streptococcus agalactiae (Group B Strep)
Streptococcus pyogenes (Group A Strep)
Vibrio cholerae, parahaemolyticus, vulnificus
RESISTANCE
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
SWAB SITES: Wound swabs (all locations)
PANEL DESCRIPTION: Patient presents with fluid-filled lesions on the skin.
Herpes simplex virus 1, 2
Pseudomonas aeruginosa
Staphylococcus aureus
Streptococcus pyogenes (Group A Strep)
Varicella zoster virus (Human Herpesvirus 3)
Vibrio cholerae, parahaemolyticus, vulnificus
Pseudomonas aeruginosa
Staphylococcus aureus
Streptococcus pyogenes (Group A Strep)
Varicella zoster virus (Human Herpesvirus 3)
Vibrio cholerae, parahaemolyticus, vulnificus
RESISTANCE
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
SWAB SITES: Wound swabs (all locations)
ADD-ON: Mpox (Monkeypox)
PANEL DESCRIPTION: Consider if patient presents with scaly ring-shaped area, itchiness, scaly skin, or noninflamed dermatosis on the body or hair follicle (tinea capitis or tinea barbae).
Candida albicans, glabrata, parapsilosis,
tropicalis
Epidermophyton floccosum
tropicalis
Epidermophyton floccosum
Malassezia furfur, restricta,
sympodialis, globosa
Microsporum audouinii, canis, gypseum
sympodialis, globosa
Microsporum audouinii, canis, gypseum
Trichophyton mentagraphophytes,
interdigitale, rubrum, soudanense, terrestre,
tonsurans, verrucosum, violaceum
interdigitale, rubrum, soudanense, terrestre,
tonsurans, verrucosum, violaceum
SWAB SITES: Wound swabs (all locations), Hair
PANEL DESCRIPTION: Consider if patient presents with skin erythema, edema, warmth, or cellulitis.
BACTERIA/VIRAL
Acinetobacter baumannii
Bacteroides fragilis, vulgatus
Citrobacter freundii
Clostridium perfringens, novyi, septicum
Corynebacterium jeikeium, striatum,
tuberculostearicum
Cutibacterium (Propionibacterium) acnes
Enterobacter cloacae complex,
Klebsiella (Enterobacter) aerogenes
Enterococcus faecalis, faecium
Escherichia coli
Haemophilus influenzae
Herpes simplex virus 1, 2
Klebsiella pneumoniae, oxytoca
Mycoplasma genitalium, hominis
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Salmonella enterica
Serratia marcescens
Staphylococcus aureus
Acinetobacter baumannii
Bacteroides fragilis, vulgatus
Citrobacter freundii
Clostridium perfringens, novyi, septicum
Corynebacterium jeikeium, striatum,
tuberculostearicum
Cutibacterium (Propionibacterium) acnes
Enterobacter cloacae complex,
Klebsiella (Enterobacter) aerogenes
Enterococcus faecalis, faecium
Escherichia coli
Haemophilus influenzae
Herpes simplex virus 1, 2
Klebsiella pneumoniae, oxytoca
Mycoplasma genitalium, hominis
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Salmonella enterica
Serratia marcescens
Staphylococcus aureus
Staphylococcus epidermidis,
haemolyticus, lugdunensis,
saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pneumoniae
Streptococcus pyogenes (Group A Strep)
Varicella zoster virus (Human Herpesvirus 3)
Vibrio cholerae, parahaemolyticus, vulnificus
haemolyticus, lugdunensis,
saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pneumoniae
Streptococcus pyogenes (Group A Strep)
Varicella zoster virus (Human Herpesvirus 3)
Vibrio cholerae, parahaemolyticus, vulnificus
FUNGI
Aspergillus flavus, fumigatus, niger, terreus
Candida albicans, glabrata, parapsilosis,
tropicalis
Epidermophyton floccosum
Fusarium oxysporum, solani
Malassezia furfur, restricta, sympodialis,
globosa
Microsporum audouinii, canis, gypseum
Trichophyton mentagraphophytes/
interdigitale, rubrum, soudanense, terrestre,
tonsurans, verrucosum, violaceum
Trichosporon mucoides, asahii
Aspergillus flavus, fumigatus, niger, terreus
Candida albicans, glabrata, parapsilosis,
tropicalis
Epidermophyton floccosum
Fusarium oxysporum, solani
Malassezia furfur, restricta, sympodialis,
globosa
Microsporum audouinii, canis, gypseum
Trichophyton mentagraphophytes/
interdigitale, rubrum, soudanense, terrestre,
tonsurans, verrucosum, violaceum
Trichosporon mucoides, asahii
RESISTANCE
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
SWAB SITES: Wound swabs (all locations)
ADD-ON: Mpox (Monkeypox)
Onychomycosis
PANEL DESCRIPTION: Minor skin disorder presenting with nail discoloration (yellow, white, or brown), dystrophy (deformed), thickening, onycholysis (separation from nail bed).
Aspergillus flavus, fumigatus, niger, terreus
Blastomyces dermatitidis
Candida albicans, glabrata, parapsilosis,
tropicalis
Epidermophyton floccosum
Fusarium oxysporum, solani
Malassezia furfur, restricta, sympodialis,
globosa
Blastomyces dermatitidis
Candida albicans, glabrata, parapsilosis,
tropicalis
Epidermophyton floccosum
Fusarium oxysporum, solani
Malassezia furfur, restricta, sympodialis,
globosa
Microsporum audouinii, canis, gypseum
Pseudomonas aeruginosa
Trichophyton mentagraphophytes/
interdigitale, rubrum, soudanense, terrestre,
tonsurans, verrucosum, violaceum
Trichosporon mucoides, asahii
Pseudomonas aeruginosa
Trichophyton mentagraphophytes/
interdigitale, rubrum, soudanense, terrestre,
tonsurans, verrucosum, violaceum
Trichosporon mucoides, asahii
RESISTANCE
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
SWAB SITES: Nail
ADD-ON: Candida auris
Ophthalmology
PANEL DESCRIPTION: Consider if patient presents with eye pain, eye redness, blurred vision, sensitivity to light, excessive tearing, and/or eye discharge.
Acanthamoeba castellani, polyphaga;
Vermamoeba (Hartmannella) vermiformis
Acinetobacter baumannii
Adenovirus
Alternaria spp., Curvularia lunata,
Penicillium spp.
Aspergillus flavus, fumigatus, niger, terreus
Bacillus cereus, thuringiensis
Candida albicans, glabrata, parapsilosis,
tropicalis
Chlamydia trachomatis
Citrobacter freundii
Cutibacterium (Propionibacterium) acnes
Cytomegalovirus (Human Herpesvirus 5)
Vermamoeba (Hartmannella) vermiformis
Acinetobacter baumannii
Adenovirus
Alternaria spp., Curvularia lunata,
Penicillium spp.
Aspergillus flavus, fumigatus, niger, terreus
Bacillus cereus, thuringiensis
Candida albicans, glabrata, parapsilosis,
tropicalis
Chlamydia trachomatis
Citrobacter freundii
Cutibacterium (Propionibacterium) acnes
Cytomegalovirus (Human Herpesvirus 5)
Enterobacter cloacae complex,
Klebsiella (Enterobacter) aerogenes
Enterococcus faecalis, faecium
Enterovirus (pan)
Epstein-Barr Virus (Human Herpesvirus 4)
Escherichia coli
Fusarium oxysporum, solani
Fusobacterium nucleatum, necrophorum
Haemophilus influenzae
Herpes simplex virus 1, 2
Klebsiella pneumoniae, oxytoca
Microsporidia (Encephalitozoon hellum,
cuniculi, Nosema (Vittaforma) ocularum)
Moraxella catarrhalis
Klebsiella (Enterobacter) aerogenes
Enterococcus faecalis, faecium
Enterovirus (pan)
Epstein-Barr Virus (Human Herpesvirus 4)
Escherichia coli
Fusarium oxysporum, solani
Fusobacterium nucleatum, necrophorum
Haemophilus influenzae
Herpes simplex virus 1, 2
Klebsiella pneumoniae, oxytoca
Microsporidia (Encephalitozoon hellum,
cuniculi, Nosema (Vittaforma) ocularum)
Moraxella catarrhalis
Morganella morganii
Neisseria gonorrhoeae
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Staphylococcus aureus
Staphylococcus epidermidis,
haemolyticus, lugdunensis,
saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pneumoniae
Streptococcus pyogenes (Group A Strep)
Varicella zoster virus (Human Herpesvirus 3)
Neisseria gonorrhoeae
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Staphylococcus aureus
Staphylococcus epidermidis,
haemolyticus, lugdunensis,
saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pneumoniae
Streptococcus pyogenes (Group A Strep)
Varicella zoster virus (Human Herpesvirus 3)
RESISTANCE
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
SWAB SITES: Eye (external), Eye (internal)
Otolaryngology
PANEL DESCRIPTION: Consider if patient presents with chronic or complicated ear, nose, or throat infection.
Acinetobacter baumannii
Adenovirus
Alternaria spp., Curvularia lunata,
Penicillium spp.
Aspergillus flavus, fumigatus, niger, terreus
Bordetella pertussis, parapertussis,
bronchiseptica
Candida albicans, glabrata, parapsilosis,
tropicalis
Chlamydia trachomatis
Cutibacterium (Propionibacterium) acnes
Cytomegalovirus (Human Herpesvirus 5)
Adenovirus
Alternaria spp., Curvularia lunata,
Penicillium spp.
Aspergillus flavus, fumigatus, niger, terreus
Bordetella pertussis, parapertussis,
bronchiseptica
Candida albicans, glabrata, parapsilosis,
tropicalis
Chlamydia trachomatis
Cutibacterium (Propionibacterium) acnes
Cytomegalovirus (Human Herpesvirus 5)
Enterobacter cloacae complex,
Klebsiella (Enterobacter) aerogenes
Enterococcus faecalis, faecium
Enterovirus (pan)
Epstein-Barr Virus (Human Herpesvirus 4)
Escherichia coli
Fusarium oxysporum, solani
Fusobacterium nucleatum, necrophorum
Haemophilus influenzae
Herpes simplex virus 1, 2
Klebsiella pneumoniae, oxytoca
Moraxella catarrhalis
Klebsiella (Enterobacter) aerogenes
Enterococcus faecalis, faecium
Enterovirus (pan)
Epstein-Barr Virus (Human Herpesvirus 4)
Escherichia coli
Fusarium oxysporum, solani
Fusobacterium nucleatum, necrophorum
Haemophilus influenzae
Herpes simplex virus 1, 2
Klebsiella pneumoniae, oxytoca
Moraxella catarrhalis
Neisseria gonorrhoeae
Parainfluenza virus (types 1, 2, 3, 4)
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Staphylococcus aureus
Staphylococcus epidermidis, haemolyticus,
lugdunensis, saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pneumoniae
Streptococcus pyogenes (Group A Strep)
Varicella zoster virus (Human Herpesvirus 3)
Parainfluenza virus (types 1, 2, 3, 4)
Proteus mirabilis, vulgaris
Pseudomonas aeruginosa
Staphylococcus aureus
Staphylococcus epidermidis, haemolyticus,
lugdunensis, saprophyticus
Streptococcus agalactiae (Group B Strep)
Streptococcus pneumoniae
Streptococcus pyogenes (Group A Strep)
Varicella zoster virus (Human Herpesvirus 3)
RESISTANCE
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
ACT, MIR, FOX, ACC Groups
CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
dfr (A1, A5), sul (1, 2)
ermB, C; mefA
IMP, NDM, VIM Groups
mecA
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
OXA-48, OXA-51
qnrA1, A2, B2
SHV, KPC Groups
tet B, tet M
VanA, VanB
SWAB SITES: Nasopharyngeal/Nares, Oropharynx/Throat/Oral, Ear, Sino-Nasal
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